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Aliases for RNU2-42P Gene

Subcategory (RNA class) for RNU2-42P Gene

snRNA

Aliases for RNU2-42P Gene

  • RNA, U2 Small Nuclear 42, Pseudogene 2 3 5

External Ids for RNU2-42P Gene

ORGUL Members for RNU2-42P Gene

Previous GeneCards Identifiers for RNU2-42P Gene

  • GC10M127580
  • GC00U936160

Summaries for RNU2-42P Gene

GeneCards Summary for RNU2-42P Gene

RNU2-42P (RNA, U2 Small Nuclear 42, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-42P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-42P Gene

Genomics for RNU2-42P Gene

GeneHancer (GH) Regulatory Elements for RNU2-42P Gene

Promoters and enhancers for RNU2-42P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I125887 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 550.8 +2.0 1987 2.3 SIX4 ATF1 FOXA2 NFRKB COPS2 GTF3C2 ZNF335 FOXK2 ZNF350 ZNF600 GC10M125891 RNU2-42P CTBP2 MMP21 EDRF1 UROS GC10P125882 GC10P125883 DHX32
GH10I125892 Enhancer 0.9 ENCODE dbSUPER 550.8 -2.0 -1987 1 ZSCAN26 DDX20 NFRKB BRCA1 ZNF507 GTF3C2 FOXM1 FOXK2 TCF7L2 ZNF174 GC10M125891 RNU2-42P EDRF1 BCCIP ENSG00000234134 EDRF1-AS1 DHX32 FANK1
GH10I125868 Enhancer 0.9 ENCODE dbSUPER 11.1 +22.1 22111 0.2 CTCF PKNOX1 FOXA2 RAD21 ZNF664 GATA3 SCRT2 ZNF143 SMC3 ZNF444 ENSG00000277371 RNU2-42P FANK1 UROS BCCIP DHX32
GH10I125915 Enhancer 0.4 ENCODE 10.2 -25.2 -25213 0.8 PKNOX1 GATA3 RNU2-42P FANK1 DHX32 GNG10P1
GH10I125929 Enhancer 0.3 ENCODE 9.9 -39.0 -39029 1.4 OSR2 FANK1 RNU2-42P DHX32 GNG10P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-42P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-42P Gene

Genomic Locations for RNU2-42P Gene
chr10:125,890,566-125,890,678
(GRCh38/hg38)
Size:
113 bases
Orientation:
Minus strand

Genomic View for RNU2-42P Gene

Genes around RNU2-42P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-42P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-42P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-42P Gene

Proteins for RNU2-42P Gene

Post-translational modifications for RNU2-42P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-42P Gene

Domains & Families for RNU2-42P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-42P Gene

Function for RNU2-42P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-42P Gene

Localization for RNU2-42P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-42P Gene

Pathways & Interactions for RNU2-42P Gene

SuperPathways for RNU2-42P Gene

No Data Available

Interacting Proteins for RNU2-42P Gene

Gene Ontology (GO) - Biological Process for RNU2-42P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-42P Gene

Drugs & Compounds for RNU2-42P Gene

No Compound Related Data Available

Transcripts for RNU2-42P Gene

mRNA/cDNA for RNU2-42P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-42P Gene

No ASD Table

Relevant External Links for RNU2-42P Gene

GeneLoc Exon Structure for
RNU2-42P
ECgene alternative splicing isoforms for
RNU2-42P

Expression for RNU2-42P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-42P Gene

genes like me logo Genes that share expression patterns with RNU2-42P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-42P Gene

Orthologs for RNU2-42P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-42P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U2 34
  • 61 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U2 34
  • 60 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25887 34
  • 55 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 34
  • 35 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U2 34
  • 32 (a)
ManyToMany
Species where no ortholog for RNU2-42P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-42P Gene

ENSEMBL:
Gene Tree for RNU2-42P (if available)
TreeFam:
Gene Tree for RNU2-42P (if available)

Paralogs for RNU2-42P Gene

No data available for Paralogs for RNU2-42P Gene

Variants for RNU2-42P Gene

Additional Variant Information for RNU2-42P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-42P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-42P Gene

Disorders for RNU2-42P Gene

No disorders were found for RNU2-42P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-42P Gene

Publications for RNU2-42P Gene

No publications were found for RNU2-42P Gene.

Products for RNU2-42P Gene

Sources for RNU2-42P Gene

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