Aliases for RNU2-38P Gene

Aliases for RNU2-38P Gene

  • RNA, U2 Small Nuclear 38, Pseudogene 2 3 5
  • RNU2-38P 5

External Ids for RNU2-38P Gene

Previous GeneCards Identifiers for RNU2-38P Gene

  • GC01P144947
  • GC00U936089

Summaries for RNU2-38P Gene

GeneCards Summary for RNU2-38P Gene

RNU2-38P (RNA, U2 Small Nuclear 38, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-38P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-38P Gene

Genomics for RNU2-38P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU2-38P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148939 Enhancer 0.6 Ensembl dbSUPER 600.7 -0.1 -84 1.4 CEBPG BRCA1 MNT CEBPB THRAP3 NFRKB RF00004-006 RNU2-38P lnc-NUDT4B-8 PDE4DIP NBPF9
GH01J148937 Enhancer 0.4 dbSUPER 600.7 +1.6 1645 1.1 ZSCAN5C ZNF350 CBX8 RF00004-006 RNU2-38P H2BC19P H2BC20P SF3B4 PDE4DIP piR-45586-003 NBPF9
GH01J148935 Enhancer 0.7 Ensembl dbSUPER 0.7 +4.1 4116 0.6 PKNOX1 IKZF2 NFE2 IKZF1 SPI1 CEBPB TBX21 MEIS2 RF00004-006 RNU2-38P piR-45586-003 PDE4DIP NBPF9
GH01J148916 Enhancer 0.8 ENCODE dbSUPER 0.4 +22.3 22302 2.5 PRDM10 ZSCAN4 TCF12 SCRT2 ARID3A DPF2 RELB ZKSCAN1 ZNF444 ARNT piR-45586-003 RF00004-006 RNU2-38P PDE4DIP NBPF9
GH01J148920 Enhancer 0.8 Ensembl dbSUPER 0.4 +18.7 18717 1 CREB1 ATF7 PRDM1 TCF12 POLR2A ZNF10 ESRRA ATF2 NBN NR2C1 piR-45586-003 RNU2-38P RF00004-006 PDE4DIP NBPF9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-38P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU2-38P Gene

Genomic Locations for RNU2-38P Gene
chr1:148,939,739-148,939,817
(GRCh38/hg38)
Size:
79 bases
Orientation:
Minus strand

Genomic View for RNU2-38P Gene

Genes around RNU2-38P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-38P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-38P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-38P Gene

Proteins for RNU2-38P Gene

Post-translational modifications for RNU2-38P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-38P Gene

Domains & Families for RNU2-38P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-38P Gene

Function for RNU2-38P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-38P Gene

Localization for RNU2-38P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-38P Gene

Pathways & Interactions for RNU2-38P Gene

PathCards logo

SuperPathways for RNU2-38P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU2-38P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-38P Gene

Drugs & Compounds for RNU2-38P Gene

No Compound Related Data Available

Transcripts for RNU2-38P Gene

mRNA/cDNA for RNU2-38P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-38P Gene

No ASD Table

Relevant External Links for RNU2-38P Gene

GeneLoc Exon Structure for
RNU2-38P

Expression for RNU2-38P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-38P Gene

genes like me logo Genes that share expression patterns with RNU2-38P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-38P Gene

Orthologs for RNU2-38P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-38P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U2 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U2 31
  • 42 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U2 31
  • 39 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U2 31
  • 32 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U2 31
  • 43 (a)
ManyToMany
Species where no ortholog for RNU2-38P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU2-38P Gene

ENSEMBL:
Gene Tree for RNU2-38P (if available)
TreeFam:
Gene Tree for RNU2-38P (if available)

Paralogs for RNU2-38P Gene

No data available for Paralogs for RNU2-38P Gene

Variants for RNU2-38P Gene

Additional Variant Information for RNU2-38P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-38P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-38P Gene

Disorders for RNU2-38P Gene

No disorders were found for RNU2-38P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-38P Gene

Publications for RNU2-38P Gene

No publications were found for RNU2-38P Gene.

No data available for Mastermind for RNU2-38P Gene

Products for RNU2-38P Gene

Sources for RNU2-38P Gene