Aliases for RNU2-23P Gene

Aliases for RNU2-23P Gene

  • RNA, U2 Small Nuclear 23, Pseudogene 2 3 5
  • RNU2-23P 5

External Ids for RNU2-23P Gene

Previous GeneCards Identifiers for RNU2-23P Gene

  • GC11P064917
  • GC00U934544

Summaries for RNU2-23P Gene

GeneCards Summary for RNU2-23P Gene

RNU2-23P (RNA, U2 Small Nuclear 23, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-23P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-23P Gene

Genomics for RNU2-23P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU2-23P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065145 Enhancer 0.5 Ensembl 250.7 -1.2 -1183 1.2 RXRA ZNF205 JUND RFX1 SP1 HNF4A PKNOX1 GABPA HIGD1AP10 HSALNG0084865 RF00004-025 RNU2-23P lnc-SYVN1-2 SAC3D1 SYVN1 SPDYC
GH11J065150 Enhancer 0.3 FANTOM5 250.7 +1.7 1680 0.1 ZNF384 RF00004-025 RNU2-23P LOC728975 MAJIN NRXN2 PDCL2P2 SYVN1 SPDYC
GH11J065211 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 11 +65.5 65455 3.1 IKZF1 POLR2A ZIC2 SIN3A MYC MAX TAF1 ZNF148 GLIS1 SP1 lnc-CAPN1-1 SLC22A20P LOC728975 POLA2 CAPN1 PGAM1P8 CDC42EP2 SPDYC ZFPL1 CDCA5
GH11J065215 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 +67.8 67817 0.8 ZNF658 ZFP91 TARDBP HDAC2 ZNF24 PKNOX1 ZBTB33 NFATC1 EGR1 HNRNPL SLC22A20P POLA2 LOC728975 CAPN1 PGAM1P8 CDC42EP2 SPDYC ENSG00000255173 ZNHIT2 HIGD1AP10
GH11J065219 Enhancer 0.5 ENCODE 10.9 +72.5 72480 0.8 GABPA GABPB1 MYC MAX GATA2 HDAC1 OSR2 MZF1 PRDM10 lnc-CAPN1-2 POLA2 LOC728975 CAPN1 PGAM1P8 CDC42EP2 SPDYC ENSG00000255173 ZNHIT2 HIGD1AP10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-23P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU2-23P Gene

Latest Assembly
chr11:65,147,584-65,147,778
(GRCh38/hg38)
Size:
195 bases
Orientation:
Plus strand

Previous Assembly
chr11:64,915,060-64,915,246
(GRCh37/hg19 by Entrez Gene)
Size:
187 bases
Orientation:
Plus strand

chr11:64,915,055-64,915,249
(GRCh37/hg19 by Ensembl)
Size:
195 bases
Orientation:
Plus strand

Genomic View for RNU2-23P Gene

Genes around RNU2-23P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-23P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-23P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-23P Gene

Proteins for RNU2-23P Gene

Post-translational modifications for RNU2-23P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-23P Gene

Domains & Families for RNU2-23P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-23P Gene

Function for RNU2-23P Gene

Phenotypes From GWAS Catalog for RNU2-23P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-23P Gene

Localization for RNU2-23P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-23P Gene

Pathways & Interactions for RNU2-23P Gene

PathCards logo

SuperPathways for RNU2-23P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU2-23P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-23P Gene

Drugs & Compounds for RNU2-23P Gene

No Compound Related Data Available

Transcripts for RNU2-23P Gene

mRNA/cDNA for RNU2-23P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-23P Gene

No ASD Table

Relevant External Links for RNU2-23P Gene

GeneLoc Exon Structure for
RNU2-23P

Expression for RNU2-23P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-23P Gene

genes like me logo Genes that share expression patterns with RNU2-23P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-23P Gene

Orthologs for RNU2-23P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-23P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U2 31
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm26316 31
  • 87 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U2 31 31 31 31 31
  • 85 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U2 31
  • 84 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U2 31
  • 83 (a)
ManyToMany
Species where no ortholog for RNU2-23P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU2-23P Gene

ENSEMBL:
Gene Tree for RNU2-23P (if available)
TreeFam:
Gene Tree for RNU2-23P (if available)

Paralogs for RNU2-23P Gene

No data available for Paralogs for RNU2-23P Gene

Variants for RNU2-23P Gene

Additional Variant Information for RNU2-23P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-23P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-23P Gene

Disorders for RNU2-23P Gene

No disorders were found for RNU2-23P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-23P Gene

Publications for RNU2-23P Gene

No publications were found for RNU2-23P Gene.

Products for RNU2-23P Gene

Sources for RNU2-23P Gene