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Aliases for RNU2-17P Gene

Subcategory (RNA class) for RNU2-17P Gene

snRNA

Aliases for RNU2-17P Gene

  • RNA, U2 Small Nuclear 17, Pseudogene 2 3 5

External Ids for RNU2-17P Gene

ORGUL Members for RNU2-17P Gene

Previous GeneCards Identifiers for RNU2-17P Gene

  • GC01P150211
  • GC00U934482

Summaries for RNU2-17P Gene

GeneCards Summary for RNU2-17P Gene

RNU2-17P (RNA, U2 Small Nuclear 17, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-17P Gene

Genomics for RNU2-17P Gene

GeneHancer (GH) Regulatory Elements for RNU2-17P Gene

Promoters and enhancers for RNU2-17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I150232 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.8 -1831 4.8 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ANP32E RNU2-17P GC01P150237 SETDB1 PRPF3 PIP5K1A GABPB2 SF3B4 ARNT UBE2D3P3
GH01I150213 Enhancer 1.4 FANTOM5 Ensembl ENCODE 13.8 -23.1 -23126 1.5 PKNOX1 CLOCK SIN3A YY1 ELK1 ZNF207 ZNF143 RUNX3 RXRA NFYC GC01P150215 GC01P150214 SETDB1 SF3B4 ANP32E PIP5K1A PRPF3 RNU2-17P ARNT HIST2H2AB
GH01I150249 Enhancer 0.3 ENCODE 0.4 +13.2 13160 0.9 ZNF664 CIART RPRD2 CA14 RNU2-17P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-17P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-17P Gene

Genomic Locations for RNU2-17P Gene
chr1:150,236,967-150,237,156
(GRCh38/hg38)
Size:
190 bases
Orientation:
Plus strand

Genomic View for RNU2-17P Gene

Genes around RNU2-17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-17P Gene

Proteins for RNU2-17P Gene

Post-translational modifications for RNU2-17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-17P Gene

Domains & Families for RNU2-17P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-17P Gene

Function for RNU2-17P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-17P Gene

Localization for RNU2-17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-17P Gene

Pathways & Interactions for RNU2-17P Gene

SuperPathways for RNU2-17P Gene

No Data Available

Interacting Proteins for RNU2-17P Gene

Gene Ontology (GO) - Biological Process for RNU2-17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-17P Gene

Drugs & Compounds for RNU2-17P Gene

No Compound Related Data Available

Transcripts for RNU2-17P Gene

mRNA/cDNA for RNU2-17P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-17P Gene

No ASD Table

Relevant External Links for RNU2-17P Gene

GeneLoc Exon Structure for
RNU2-17P
ECgene alternative splicing isoforms for
RNU2-17P

Expression for RNU2-17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-17P Gene

genes like me logo Genes that share expression patterns with RNU2-17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-17P Gene

Orthologs for RNU2-17P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-17P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 34
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34 34 34 34
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22768 34
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U2 34
  • 75 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U2 34
  • 82 (a)
ManyToMany
Species where no ortholog for RNU2-17P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU2-17P Gene

ENSEMBL:
Gene Tree for RNU2-17P (if available)
TreeFam:
Gene Tree for RNU2-17P (if available)

Paralogs for RNU2-17P Gene

No data available for Paralogs for RNU2-17P Gene

Variants for RNU2-17P Gene

Additional Variant Information for RNU2-17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-17P Gene

Disorders for RNU2-17P Gene

No disorders were found for RNU2-17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-17P Gene

Publications for RNU2-17P Gene

No publications were found for RNU2-17P Gene.

Products for RNU2-17P Gene

Sources for RNU2-17P Gene

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