Aliases for RNU2-17P Gene

Aliases for RNU2-17P Gene

  • RNA, U2 Small Nuclear 17, Pseudogene 2 3 5

External Ids for RNU2-17P Gene

Previous GeneCards Identifiers for RNU2-17P Gene

  • GC01P150211
  • GC00U934482

Summaries for RNU2-17P Gene

GeneCards Summary for RNU2-17P Gene

RNU2-17P (RNA, U2 Small Nuclear 17, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-17P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-17P Gene

Genomics for RNU2-17P Gene

GeneHancer (GH) Regulatory Elements for RNU2-17P Gene

Promoters and enhancers for RNU2-17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150232 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.8 -1791 4.9 FOXK2 ZNF217 ZSCAN5C TCF12 SIN3A MYC NRF1 POLR2G SP1 RBAK ANP32E RF00004-007 RNU2-17P SETDB1 GABPB2 PRPF3 PIP5K1A RPRD2 ARNT ENSG00000220323
GH01J150213 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 13.8 -23.1 -23142 1.5 ZNF217 CTCF MYC USF1 SP1 PHF8 POLR2A ZBTB26 NFYB CTBP1 lnc-CA14-1 lnc-CA14-2 ANP32E RNU2-17P CIART CA14 C1orf54 APH1A PLEKHO1 MTMR11
GH01J150207 Enhancer 0.5 Ensembl 12.6 -29.4 -29366 0.4 FOXA2 ZNF707 HNF4A FOXA1 FOXA3 NR2C1 ANP32E RNU2-17P PIP5K1A SETDB1 SF3B4 CA14 MTMR11 PRPF3 RF00017-326 RN7SL480P
GH01J150215 Enhancer 0.3 Ensembl 13.4 -20.2 -20166 1.2 ZNF133 ZNF121 lnc-CA14-1 RNU2-17P CIART CA14 APH1A C1orf54 PLEKHO1 TARS2 SEMA6C RPRD2
GH01J150249 Enhancer 0.4 Ensembl ENCODE 0.4 +13.4 13372 1.3 ZNF664 CIART RPRD2 C1orf56 CA14 RNU2-17P RF00004-007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-17P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-17P Gene

Genomic Locations for RNU2-17P Gene
chr1:150,236,967-150,237,156
(GRCh38/hg38)
Size:
190 bases
Orientation:
Plus strand

Genomic View for RNU2-17P Gene

Genes around RNU2-17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-17P Gene

Proteins for RNU2-17P Gene

Post-translational modifications for RNU2-17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-17P Gene

Domains & Families for RNU2-17P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-17P Gene

Function for RNU2-17P Gene

Phenotypes From GWAS Catalog for RNU2-17P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-17P Gene

Localization for RNU2-17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-17P Gene

Pathways & Interactions for RNU2-17P Gene

PathCards logo

SuperPathways for RNU2-17P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU2-17P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-17P Gene

Drugs & Compounds for RNU2-17P Gene

No Compound Related Data Available

Transcripts for RNU2-17P Gene

mRNA/cDNA for RNU2-17P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-17P Gene

No ASD Table

Relevant External Links for RNU2-17P Gene

GeneLoc Exon Structure for
RNU2-17P

Expression for RNU2-17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-17P Gene

genes like me logo Genes that share expression patterns with RNU2-17P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-17P Gene

Orthologs for RNU2-17P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-17P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 31
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 31
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 31 31 31 31
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22768 31
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U2 31
  • 75 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U2 31
  • 82 (a)
ManyToMany
Species where no ortholog for RNU2-17P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU2-17P Gene

ENSEMBL:
Gene Tree for RNU2-17P (if available)
TreeFam:
Gene Tree for RNU2-17P (if available)

Paralogs for RNU2-17P Gene

No data available for Paralogs for RNU2-17P Gene

Variants for RNU2-17P Gene

Additional Variant Information for RNU2-17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-17P Gene

Disorders for RNU2-17P Gene

No disorders were found for RNU2-17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-17P Gene

Publications for RNU2-17P Gene

No publications were found for RNU2-17P Gene.

No data available for Mastermind for RNU2-17P Gene

Products for RNU2-17P Gene

Sources for RNU2-17P Gene