Aliases for RNU2-16P Gene

Aliases for RNU2-16P Gene

  • RNA, U2 Small Nuclear 16, Pseudogene 2 3 5

External Ids for RNU2-16P Gene

Previous GeneCards Identifiers for RNU2-16P Gene

  • GC04M076752
  • GC00U936058

Summaries for RNU2-16P Gene

GeneCards Summary for RNU2-16P Gene

RNU2-16P (RNA, U2 Small Nuclear 16, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-16P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-16P Gene

Genomics for RNU2-16P Gene

GeneHancer (GH) Regulatory Elements for RNU2-16P Gene

Promoters and enhancers for RNU2-16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J075682 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +144.3 144288 5.4 TRIM24 TRIM28 ZNF280A CBX5 ZFP36 SETDB1 SPI1 CHAMP1 RUNX3 G3BP2 USO1 ENSG00000229717 RNU2-16P CDKL2 ODAPH RCHY1 lnc-CDKL2-2 piR-61945-387
GH04J075860 Enhancer 0.4 ENCODE 11.3 -31.3 -31342 1.3 CUX1 SMARCA4 HLF GATA3 PRDM10 PPEF2 RNU2-16P ENSG00000229717 CDKL2 piR-37097-076 LOC105377285
GH04J075851 Enhancer 0.2 Ensembl 12.6 -21.6 -21612 0.4 RNU2-16P ENSG00000229717 PPEF2 piR-37097-076 RF00004-088
GH04J075781 Enhancer 0.2 Ensembl 11.6 +48.4 48388 0.4 ENSG00000229717 RNU2-16P PPEF2 NONHSAG038231.2 piR-50444-344 USO1
GH04J075831 Enhancer 0.6 Ensembl ENCODE 0.7 -2.5 -2512 1.4 USF1 TCF12 SPI1 POLR2A MAX PRDM10 NAAA RF00004-088 RNU2-16P ENSG00000229717 LOC105377284 piR-37097-076
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-16P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-16P Gene

Genomic Locations for RNU2-16P Gene
chr4:75,829,454-75,829,589
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for RNU2-16P Gene

Genes around RNU2-16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-16P Gene

Proteins for RNU2-16P Gene

Post-translational modifications for RNU2-16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-16P Gene

Domains & Families for RNU2-16P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-16P Gene

Function for RNU2-16P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-16P Gene

Localization for RNU2-16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-16P Gene

Pathways & Interactions for RNU2-16P Gene

PathCards logo

SuperPathways for RNU2-16P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU2-16P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-16P Gene

Drugs & Compounds for RNU2-16P Gene

No Compound Related Data Available

Transcripts for RNU2-16P Gene

mRNA/cDNA for RNU2-16P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-16P Gene

No ASD Table

Relevant External Links for RNU2-16P Gene

GeneLoc Exon Structure for
RNU2-16P

Expression for RNU2-16P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-16P Gene

genes like me logo Genes that share expression patterns with RNU2-16P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-16P Gene

Orthologs for RNU2-16P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-16P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 31
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 31
  • 53 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia U2 31
  • 53 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U2 31
  • 41 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 31
  • 33 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U2 31
  • 42 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U2 31
  • 41 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U2 31 31 31 31
  • 38 (a)
ManyToMany
Species where no ortholog for RNU2-16P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-16P Gene

ENSEMBL:
Gene Tree for RNU2-16P (if available)
TreeFam:
Gene Tree for RNU2-16P (if available)

Paralogs for RNU2-16P Gene

No data available for Paralogs for RNU2-16P Gene

Variants for RNU2-16P Gene

Additional Variant Information for RNU2-16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-16P Gene

Disorders for RNU2-16P Gene

No disorders were found for RNU2-16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-16P Gene

Publications for RNU2-16P Gene

No publications were found for RNU2-16P Gene.

No data available for Mastermind for RNU2-16P Gene

Products for RNU2-16P Gene

Sources for RNU2-16P Gene