RNU2-15P Gene (Pseudogene)

RNA, U2 Small Nuclear 15, Pseudogene

GC01P065415
GIFtS:
7
See more...

Aliases for RNU2-15P Gene

Aliases for RNU2-15P Gene

  • RNA, U2 Small Nuclear 15, Pseudogene 2 3 5
  • RNU2-15P 5

External Ids for RNU2-15P Gene

Previous GeneCards Identifiers for RNU2-15P Gene

  • GC01P065884
  • GC00U935167

Summaries for RNU2-15P Gene

GeneCards Summary for RNU2-15P Gene

RNU2-15P (RNA, U2 Small Nuclear 15, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-15P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-15P Gene

Genomics for RNU2-15P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU2-15P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J065264 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -150.3 -150271 2.3 HNRNPL CTCF TEAD4 PRDM10 ZNF629 KDM1A ZNF692 PRDM1 ZIC2 ZSCAN4 DNAJC6 RNU2-15P LEPR LEPROT lnc-JAK1-8 COX6CP13
GH01J065277 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 10.9 -137.1 -137057 1.4 TEAD4 IKZF1 DDX20 ZIC2 HDAC1 ETV6 SOX6 FOXJ2 TCF12 EP300 DNAJC6 RNU2-15P LEPR LEPROT AK4 COX6CP13 lnc-JAK1-8
GH01J065687 Enhancer 1.1 Ensembl ENCODE 10.4 +272.3 272285 2.2 GATAD2A CTCF PRDM10 ZNF629 SOX13 ZNF692 RCOR2 JUND ZIC2 PKNOX1 SLC2A3P2 JAK1 LEPR LEPROT RNU2-15P AK4 piR-55194-006 ENSG00000285079 PDE4B
GH01J065467 Enhancer 1.2 Ensembl ENCODE 10 +53.5 53485 4.6 GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 ZNF512 SOX13 ZNF692 RCOR2 piR-61240-006 LEPR LEPROT RNU2-15P PDE4B HSALNG0004202
GH01J065215 Enhancer 1 Ensembl ENCODE 10.6 -200.1 -200116 3.4 CTCF JUND REST ZNF24 HDAC1 SOX6 GATAD2B EP300 SCRT2 RAD21 AK4 DNAJC6 MIR101-1 LEPR LEPROT RNU2-15P lnc-DNAJC6-2 lnc-DNAJC6-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-15P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU2-15P Gene

Genomic Locations for RNU2-15P Gene
chr1:65,415,816-65,416,006
(GRCh38/hg38)
Size:
191 bases
Orientation:
Plus strand

Genomic View for RNU2-15P Gene

Genes around RNU2-15P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-15P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-15P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU2-15P Gene

Proteins for RNU2-15P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU2-15P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-15P Gene

Domains & Families for RNU2-15P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-15P Gene

Function for RNU2-15P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU2-15P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-15P Gene

Localization for RNU2-15P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-15P Gene

Pathways & Interactions for RNU2-15P Gene

PathCards logo

SuperPathways for RNU2-15P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU2-15P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-15P Gene

Drugs & Compounds for RNU2-15P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU2-15P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU2-15P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-15P Gene

No ASD Table

Relevant External Links for RNU2-15P Gene

GeneLoc Exon Structure for
RNU2-15P

Expression for RNU2-15P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-15P Gene

mRNA expression in normal human tissues for RNU2-15P Gene
mRNA expression by GTEx for RNU2-15P Gene
genes like me logo Genes that share expression patterns with RNU2-15P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-15P Gene

Orthologs for RNU2-15P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-15P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U2 31
  • 99 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia U2 31
  • 63 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia U2 31 31
  • 76 (a)
 ManyToMany
Species where no ortholog for RNU2-15P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU2-15P Gene

ENSEMBL:
Gene Tree for RNU2-15P (if available)
TreeFam:
Gene Tree for RNU2-15P (if available)

Paralogs for RNU2-15P Gene

No data available for Paralogs for RNU2-15P Gene

Variants for RNU2-15P Gene

Additional Variant Information for RNU2-15P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-15P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-15P Gene

Disorders for RNU2-15P Gene

No disorders were found for RNU2-15P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-15P Gene

Publications for RNU2-15P Gene

No publications were found for RNU2-15P Gene.

No data available for Mastermind for RNU2-15P Gene

Products for RNU2-15P Gene

Sources for RNU2-15P Gene