Aliases for RNU1-88P Gene

Aliases for RNU1-88P Gene

  • RNA, U1 Small Nuclear 88, Pseudogene 2 3 5

External Ids for RNU1-88P Gene

Previous GeneCards Identifiers for RNU1-88P Gene

  • GC06M036609
  • GC00U935407
  • GC06M038971
  • GC06M039790
  • GC06M036743
  • GC06M036742
  • GC06M037032
  • GC06M037382
  • GC06M037738
  • GC06M038085
  • GC06M038474
  • GC06M038820

Summaries for RNU1-88P Gene

GeneCards Summary for RNU1-88P Gene

RNU1-88P (RNA, U1 Small Nuclear 88, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-88P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-88P Gene

Genomics for RNU1-88P Gene

GeneHancer (GH) Regulatory Elements for RNU1-88P Gene

Promoters and enhancers for RNU1-88P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J036639 Enhancer 0.3 Ensembl 750.6 0.0 -28 0.2 POLR2A LOC105375038 RF00003-080 RNU1-88P KU881768 RF00017-5487 RF00017-5484 RF00017-5490
GH06J036675 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 26.3 -41.2 -41177 10.4 ZNF785 ZNF24 SP1 ZBTB40 CTCF SREBF1 LCORL MLX FOXA1 RBPJ CDKN1A SRSF3 CMTR1 RNF8 RNU1-88P STK38 BRPF3 RAB44 MAPK14 LAP3P2
GH06J036592 Promoter/Enhancer 3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.8 +42.3 42253 10.7 PPP1R10 ZNF785 SIN3A ZBTB40 SP1 CTCF SREBF1 MLX POLR2A CTBP1 SRSF3 C6orf89 CMTR1 CDKN1A RAB44 MAPK14 BRPF3 FKBP5 KCTD20 STK38
GH06J037168 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 -533.5 -533478 10.2 FOXK2 E2F8 SIN3A ZNF24 SP1 ZBTB40 CTCF SREBF1 ZBTB6 LCORL PIM1 SRSF3 CMTR1 BRPF3 RAB44 STK38 CDKN1A MTCH1 LAP3P2 RNU1-88P
GH06J036983 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 -345.8 -345757 4.5 ZNF785 SIN3A ZNF24 ZBTB40 SP1 SREBF1 SIX5 ZBTB6 RBPJ SMARCE1 MTCH1 lnc-FGD2-2 CMTR1 SRSF3 BRPF3 MAPK14 TBC1D22B ENSG00000237719 LAP3P2 RNU1-88P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-88P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-88P Gene

Genomic Locations for RNU1-88P Gene
chr6:36,639,545-36,639,672
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand

Genomic View for RNU1-88P Gene

Genes around RNU1-88P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-88P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-88P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-88P Gene

Proteins for RNU1-88P Gene

Post-translational modifications for RNU1-88P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-88P Gene

Domains & Families for RNU1-88P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-88P Gene

Function for RNU1-88P Gene

Phenotypes From GWAS Catalog for RNU1-88P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-88P Gene

Localization for RNU1-88P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-88P Gene

Pathways & Interactions for RNU1-88P Gene

PathCards logo

SuperPathways for RNU1-88P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU1-88P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-88P Gene

Drugs & Compounds for RNU1-88P Gene

No Compound Related Data Available

Transcripts for RNU1-88P Gene

mRNA/cDNA for RNU1-88P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-88P Gene

No ASD Table

Relevant External Links for RNU1-88P Gene

GeneLoc Exon Structure for
RNU1-88P
ECgene alternative splicing isoforms for
RNU1-88P

Expression for RNU1-88P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-88P Gene

genes like me logo Genes that share expression patterns with RNU1-88P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-88P Gene

Orthologs for RNU1-88P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU1-88P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 33
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23303 33
  • 63 (a)
ManyToMany
Species where no ortholog for RNU1-88P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-88P Gene

ENSEMBL:
Gene Tree for RNU1-88P (if available)
TreeFam:
Gene Tree for RNU1-88P (if available)

Paralogs for RNU1-88P Gene

No data available for Paralogs for RNU1-88P Gene

Variants for RNU1-88P Gene

Additional Variant Information for RNU1-88P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-88P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-88P Gene

Disorders for RNU1-88P Gene

No disorders were found for RNU1-88P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-88P Gene

Publications for RNU1-88P Gene

No publications were found for RNU1-88P Gene.

Products for RNU1-88P Gene

Sources for RNU1-88P Gene