Aliases for RNU1-88P Gene

Aliases for RNU1-88P Gene

  • RNA, U1 Small Nuclear 88, Pseudogene 2 3 5
  • RNU1-88P 5

External Ids for RNU1-88P Gene

Previous GeneCards Identifiers for RNU1-88P Gene

  • GC06M036609
  • GC00U935407
  • GC06M038971
  • GC06M039790
  • GC06M039969
  • GC06M041301
  • GC06M036743
  • GC06M036742
  • GC06M037032
  • GC06M037382
  • GC06M037738
  • GC06M038085
  • GC06M038474
  • GC06M038820
  • GC06M042231
  • GC06M043487

Summaries for RNU1-88P Gene

GeneCards Summary for RNU1-88P Gene

RNU1-88P (RNA, U1 Small Nuclear 88, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-88P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-88P Gene

Genomics for RNU1-88P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU1-88P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-88P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU1-88P Gene

Latest Assembly
chr6:36,639,545-36,639,672
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand

Previous Assembly
chr6:36,607,344-36,607,449
(GRCh37/hg19 by Entrez Gene)
Size:
106 bases
Orientation:
Minus strand

chr6:36,607,322-36,607,449
(GRCh37/hg19 by Ensembl)
Size:
128 bases
Orientation:
Minus strand

Genomic View for RNU1-88P Gene

Genes around RNU1-88P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-88P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-88P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-88P Gene

Proteins for RNU1-88P Gene

Post-translational modifications for RNU1-88P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-88P Gene

Domains & Families for RNU1-88P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-88P Gene

Function for RNU1-88P Gene

Phenotypes From GWAS Catalog for RNU1-88P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-88P Gene

Localization for RNU1-88P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-88P Gene

Pathways & Interactions for RNU1-88P Gene

PathCards logo

SuperPathways for RNU1-88P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU1-88P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-88P Gene

Drugs & Compounds for RNU1-88P Gene

No Compound Related Data Available

Transcripts for RNU1-88P Gene

mRNA/cDNA for RNU1-88P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-88P Gene

No ASD Table

Relevant External Links for RNU1-88P Gene

GeneLoc Exon Structure for
RNU1-88P

Expression for RNU1-88P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-88P Gene

genes like me logo Genes that share expression patterns with RNU1-88P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-88P Gene

Orthologs for RNU1-88P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU1-88P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U1 30
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23303 30
  • 63 (a)
ManyToMany
Species where no ortholog for RNU1-88P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU1-88P Gene

ENSEMBL:
Gene Tree for RNU1-88P (if available)
TreeFam:
Gene Tree for RNU1-88P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU1-88P

Paralogs for RNU1-88P Gene

No data available for Paralogs for RNU1-88P Gene

Variants for RNU1-88P Gene

Additional Variant Information for RNU1-88P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-88P
Leiden Open Variation Database (LOVD)
RNU1-88P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-88P Gene

Disorders for RNU1-88P Gene

No disorders were found for RNU1-88P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-88P Gene

Publications for RNU1-88P Gene

No publications were found for RNU1-88P Gene.

Products for RNU1-88P Gene

Sources for RNU1-88P Gene