RNU1-80P Gene (Pseudogene)

RNA, U1 Small Nuclear 80, Pseudogene

GC17P077920
GIFtS:
7
See more...

Aliases for RNU1-80P Gene

Aliases for RNU1-80P Gene

  • RNA, U1 Small Nuclear 80, Pseudogene 2 3 5
  • RNU1-80P 5

External Ids for RNU1-80P Gene

Previous GeneCards Identifiers for RNU1-80P Gene

  • GC17P075919
  • GC00U934843

Summaries for RNU1-80P Gene

GeneCards Summary for RNU1-80P Gene

RNU1-80P (RNA, U1 Small Nuclear 80, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-80P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-80P Gene

Genomics for RNU1-80P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU1-80P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077919 Enhancer 0.3 Ensembl 600.7 -0.7 -670 0.3 SMARCA4 RF00003-039 RNU1-80P LINC01973 TNRC6C SEPTIN9
GH17J077957 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.2 +39.1 39131 4.2 RNF2 SP1 CREB1 TEAD4 PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ TNRC6C lnc-TMC6-5 USP36 CEP295NL SEPTIN9 SNHG20 RNU1-80P LINC01973 TMC8 TMC6
GH17J077869 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -50.3 -50294 1.2 SP1 BACH1 STAT3 ZNF143 IKZF2 RCOR1 TRIM22 PKNOX1 EED CEBPB RNU1-80P SOCS3 lnc-TNRC6C-6 lnc-TNRC6C-5 TNRC6C SEPTIN9
GH17J077801 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 -117.2 -117193 2.2 RFX1 ZSCAN4 POLR2A ZNF341 MNT RAD21 ZBTB17 YY1 ZFHX2 RCOR1 lnc-TMC6-1 TNRC6C LINC01973 RNU1-80P TMEM235 HSALNG0118960 LOC105371908 SEPTIN9
GH17J078039 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +120.7 120697 3.4 ZHX2 LARP7 ZNF143 CTCF YY1 ZNF341 POLR2A SP1 DPF2 RELB RNU6-625P TMEM235 TNRC6C RNU1-80P RF00017-2568 LOC107985010 TMC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-80P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU1-80P Gene

Genomic Locations for RNU1-80P Gene
chr17:77,920,098-77,920,258
(GRCh38/hg38)
Size:
161 bases
Orientation:
Plus strand

Genomic View for RNU1-80P Gene

Genes around RNU1-80P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-80P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-80P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU1-80P Gene

Proteins for RNU1-80P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU1-80P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-80P Gene

Domains & Families for RNU1-80P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-80P Gene

Function for RNU1-80P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU1-80P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-80P Gene

Localization for RNU1-80P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-80P Gene

Pathways & Interactions for RNU1-80P Gene

PathCards logo

SuperPathways for RNU1-80P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU1-80P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-80P Gene

Drugs & Compounds for RNU1-80P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU1-80P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU1-80P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-80P Gene

No ASD Table

Relevant External Links for RNU1-80P Gene

GeneLoc Exon Structure for
RNU1-80P

Expression for RNU1-80P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-80P Gene

mRNA expression in normal human tissues for RNU1-80P Gene
mRNA expression by GTEx for RNU1-80P Gene
genes like me logo Genes that share expression patterns with RNU1-80P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-80P Gene

Orthologs for RNU1-80P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-80P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U1 31
  • 97 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Gm24621 31
  • 74 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia U1 31
  • 73 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia U1 31
  • 63 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia U1 31
  • 62 (a)
 ManyToMany
Species where no ortholog for RNU1-80P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU1-80P Gene

ENSEMBL:
Gene Tree for RNU1-80P (if available)
TreeFam:
Gene Tree for RNU1-80P (if available)

Paralogs for RNU1-80P Gene

No data available for Paralogs for RNU1-80P Gene

Variants for RNU1-80P Gene

Additional Variant Information for RNU1-80P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-80P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-80P Gene

Disorders for RNU1-80P Gene

No disorders were found for RNU1-80P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-80P Gene

Publications for RNU1-80P Gene

No publications were found for RNU1-80P Gene.

No data available for Mastermind for RNU1-80P Gene

Products for RNU1-80P Gene

Sources for RNU1-80P Gene