Aliases for RNU1-58P Gene

Aliases for RNU1-58P Gene

  • RNA, U1 Small Nuclear 58, Pseudogene 2 3 5

External Ids for RNU1-58P Gene

Previous GeneCards Identifiers for RNU1-58P Gene

  • GC07P139944
  • GC00U935405

Summaries for RNU1-58P Gene

GeneCards Summary for RNU1-58P Gene

RNU1-58P (RNA, U1 Small Nuclear 58, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-58P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-58P Gene

Genomics for RNU1-58P Gene

GeneHancer (GH) Regulatory Elements for RNU1-58P Gene

Promoters and enhancers for RNU1-58P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J140238 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -0.5 -543 6.1 ZNF263 ZBTB11 AFF1 TRIM28 REST RELA HES1 TOE1 MYC CTBP1 RF00003-084 RNU1-58P RNU6-797P KDM7A PARP12 RF00017-6687 lnc-RAB19-3
GH07J140084 Enhancer 1 Ensembl ENCODE 11.1 -157.9 -157869 6.4 POLR2G MYC BCL11A HDAC2 RELA ZNF316 GATA3 GABPA MAX ARNT KDM7A RNU1-58P KDM7A-DT lnc-PARP12-1 piR-40666-025 lnc-TBXAS1-1
GH07J140310 Enhancer 0.8 ENCODE 10.9 +68.7 68666 0.2 ZNF217 TCF12 TCF7 FOXA1 SKI TEAD1 TBX3 CTBP1 ESRRA FOXA2 KDM7A RNU6-797P RNU1-58P HSALNG0061787 LOC105375534 SLC37A3
GH07J140220 Enhancer 0.7 Ensembl ENCODE 11.2 -21.7 -21688 1.1 CTBP1 RBM25 TBL1XR1 BCOR DPF2 RCOR1 KDM1A ZMYM3 SMARCE1 ZNF24 KDM7A RNU1-58P KDM7A-DT RF00026-1044 lnc-RAB19-3 RNU6-797P
GH07J140188 Enhancer 0.7 Ensembl 11.4 -53.2 -53169 0.2 HNRNPK HINFP MCM3 EHMT2 MCM5 ZNF639 CSDE1 DPF2 NBN PCBP1 RNU6-797P RNU1-58P KDM7A SLC37A3 PARP12 LUC7L2 piR-54298 piR-37097-112
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-58P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-58P Gene

Genomic Locations for RNU1-58P Gene
chr7:140,241,870-140,242,032
(GRCh38/hg38)
Size:
163 bases
Orientation:
Plus strand

Genomic View for RNU1-58P Gene

Genes around RNU1-58P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-58P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-58P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-58P Gene

Proteins for RNU1-58P Gene

Post-translational modifications for RNU1-58P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-58P Gene

Domains & Families for RNU1-58P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-58P Gene

Function for RNU1-58P Gene

Phenotypes From GWAS Catalog for RNU1-58P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-58P Gene

Localization for RNU1-58P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-58P Gene

Pathways & Interactions for RNU1-58P Gene

PathCards logo

SuperPathways for RNU1-58P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU1-58P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-58P Gene

Drugs & Compounds for RNU1-58P Gene

No Compound Related Data Available

Transcripts for RNU1-58P Gene

mRNA/cDNA for RNU1-58P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-58P Gene

No ASD Table

Relevant External Links for RNU1-58P Gene

GeneLoc Exon Structure for
RNU1-58P

Expression for RNU1-58P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-58P Gene

genes like me logo Genes that share expression patterns with RNU1-58P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-58P Gene

Orthologs for RNU1-58P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-58P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 31
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 31
  • 80 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U1 31
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 31
  • 72 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23099 31
  • 66 (a)
OneToOne
Species where no ortholog for RNU1-58P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-58P Gene

ENSEMBL:
Gene Tree for RNU1-58P (if available)
TreeFam:
Gene Tree for RNU1-58P (if available)

Paralogs for RNU1-58P Gene

No data available for Paralogs for RNU1-58P Gene

Variants for RNU1-58P Gene

Additional Variant Information for RNU1-58P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-58P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-58P Gene

Disorders for RNU1-58P Gene

No disorders were found for RNU1-58P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-58P Gene

Publications for RNU1-58P Gene

No publications were found for RNU1-58P Gene.

No data available for Mastermind for RNU1-58P Gene

Products for RNU1-58P Gene

Sources for RNU1-58P Gene