RNU1-36P Gene (Pseudogene)

RNA, U1 Small Nuclear 36, Pseudogene

GC04P088000
GIFtS:
7
See more...

Aliases for RNU1-36P Gene

Aliases for RNU1-36P Gene

  • RNA, U1 Small Nuclear 36, Pseudogene 2 3 5
  • RNU1-36P 5

External Ids for RNU1-36P Gene

Previous GeneCards Identifiers for RNU1-36P Gene

  • GC04P088923
  • GC00U935987

Summaries for RNU1-36P Gene

GeneCards Summary for RNU1-36P Gene

RNU1-36P (RNA, U1 Small Nuclear 36, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-36P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-36P Gene

Genomics for RNU1-36P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU1-36P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J087974 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE 5.5 -23.1 -23136 4.6 MAFF SAP130 RXRA MIER3 KMT2B TEAD3 DRAP1 SPI1 NFE2 NFE2L2 NONHSAG038390.2 SPP1 PKD2 RNU1-36P HSALNG0035728 ENSG00000286618
GH04J088002 Enhancer 0.4 Ensembl dbSUPER 0.7 +3.1 3064 1 PRDM4 HSALNG0035731 RF00003-063 lnc-ABCG2-3 PKD2 RNU1-36P ENSG00000286618 SPP1
GH04J087984 Enhancer 0.7 Ensembl 0.4 -14.4 -14437 0.8 CTCF SAP130 RAD21 YY1 SMC3 ZNF205 HNF4A TFAP4 IKZF5 ARID4B PKD2 RNU6ATAC31P HSALNG0035728 RNU1-36P SPP1 RF00003-063 ENSG00000286618
GH04J087995 Enhancer 0.3 Ensembl 0.7 -4.5 -4536 0.6 ATF2 ATF7 RF00003-063 RNU1-36P PKD2 HSALNG0035728 ENSG00000286618 SPP1
GH04J087989 Enhancer 0.5 Ensembl 0.4 -10.2 -10236 0.4 JUND ATF2 CREB1 ATF7 MNT RNU6ATAC31P HSALNG0035728 RNU1-36P SPP1 RF00003-063 ENSG00000286618 PKD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-36P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU1-36P Gene

Latest Assembly
chr4:88,000,237-88,000,401
(GRCh38/hg38)
Size:
165 bases
Orientation:
Plus strand

Previous Assembly
chr4:88,921,389-88,921,553
(GRCh37/hg19 by Entrez Gene)
Size:
165 bases
Orientation:
Plus strand

chr4:88,921,389-88,921,553
(GRCh37/hg19 by Ensembl)
Size:
165 bases
Orientation:
Plus strand

Genomic View for RNU1-36P Gene

Genes around RNU1-36P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-36P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-36P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU1-36P Gene

Proteins for RNU1-36P Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RNU1-36P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-36P Gene

Domains & Families for RNU1-36P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-36P Gene

Function for RNU1-36P Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-36P Gene

Localization for RNU1-36P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-36P Gene

Pathways & Interactions for RNU1-36P Gene

PathCards logo

SuperPathways for RNU1-36P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU1-36P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-36P Gene

Drugs & Compounds for RNU1-36P Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RNU1-36P Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for RNU1-36P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-36P Gene

No ASD Table

Relevant External Links for RNU1-36P Gene

GeneLoc Exon Structure for
RNU1-36P

Expression for RNU1-36P Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-36P Gene

mRNA expression in normal human tissues for RNU1-36P Gene
mRNA expression by GTEx for RNU1-36P Gene
genes like me logo Genes that share expression patterns with RNU1-36P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-36P Gene

Orthologs for RNU1-36P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-36P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U1 31
  • 97 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia U1 31
  • 81 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia Gm26442 31
  • 77 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia U1 31
  • 77 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia U1 31
  • 76 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia U1 31
  • 77 (a)
 ManyToMany
Species where no ortholog for RNU1-36P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU1-36P Gene

ENSEMBL:
Gene Tree for RNU1-36P (if available)
TreeFam:
Gene Tree for RNU1-36P (if available)

Paralogs for RNU1-36P Gene

No data available for Paralogs for RNU1-36P Gene

Variants for RNU1-36P Gene

Additional Variant Information for RNU1-36P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-36P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-36P Gene

Disorders for RNU1-36P Gene

No disorders were found for RNU1-36P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-36P Gene

Publications for RNU1-36P Gene

No publications were found for RNU1-36P Gene.

No data available for Mastermind for RNU1-36P Gene

Products for RNU1-36P Gene

Sources for RNU1-36P Gene