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Aliases for RNU1-139P Gene

Subcategory (RNA class) for RNU1-139P Gene

snRNA

Aliases for RNU1-139P Gene

  • RNA, U1 Small Nuclear 139, Pseudogene 2 3 5

External Ids for RNU1-139P Gene

ORGUL Members for RNU1-139P Gene

Previous GeneCards Identifiers for RNU1-139P Gene

  • GC21P020719
  • GC00U936003

Summaries for RNU1-139P Gene

GeneCards Summary for RNU1-139P Gene

RNU1-139P (RNA, U1 Small Nuclear 139, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU1-139P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-139P Gene

Genomics for RNU1-139P Gene

GeneHancer (GH) Regulatory Elements for RNU1-139P Gene

Promoters and enhancers for RNU1-139P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J019490 Enhancer 0.7 ENCODE 11 +145.5 145512 0.2 LEF1 TEAD4 TAL1 CHAMP1 CCNT2 TCF12 CC2D1A GATA2 NCOR1 CBFA2T2 RNU1-139P RPL37P4
GH21J019489 Enhancer 0.6 ENCODE 11 +145.1 145063 0.5 ZNF282 CBFA2T3 DPF2 ATF2 CHAMP1 CC2D1A CCNT2 HMBOX1 TRIM24 KDM1A RNU1-139P RPL37P4
GH21J019493 Enhancer 0.6 FANTOM5 11 +149.0 149043 0.4 CC2D1A NFATC3 NRF1 ASH1L ZFX CHAMP1 RNU1-139P RPL37P4
GH21J019440 Enhancer 0.6 ENCODE 0.2 +96.1 96118 0.8 MEIS2 MTA2 TEAD4 TAL1 CBFA2T3 PAX8 DPF2 TCF12 NCOR1 CBFA2T2 RNU1-139P RPL37P4
GH21J019349 Enhancer 0.2 ENCODE 0.4 +5.3 5313 1.2 RNU1-139P RPL37P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-139P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-139P Gene

Genomic Locations for RNU1-139P Gene
chr21:19,345,148-19,345,312
(GRCh38/hg38)
Size:
165 bases
Orientation:
Plus strand

Genomic View for RNU1-139P Gene

Genes around RNU1-139P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-139P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-139P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-139P Gene

Proteins for RNU1-139P Gene

Post-translational modifications for RNU1-139P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-139P Gene

Domains & Families for RNU1-139P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-139P Gene

Function for RNU1-139P Gene

Phenotypes From GWAS Catalog for RNU1-139P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-139P Gene

Localization for RNU1-139P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-139P Gene

Pathways & Interactions for RNU1-139P Gene

SuperPathways for RNU1-139P Gene

No Data Available

Interacting Proteins for RNU1-139P Gene

Gene Ontology (GO) - Biological Process for RNU1-139P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU1-139P Gene

Drugs & Compounds for RNU1-139P Gene

No Compound Related Data Available

Transcripts for RNU1-139P Gene

mRNA/cDNA for RNU1-139P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-139P Gene

No ASD Table

Relevant External Links for RNU1-139P Gene

GeneLoc Exon Structure for
RNU1-139P
ECgene alternative splicing isoforms for
RNU1-139P

Expression for RNU1-139P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-139P Gene

genes like me logo Genes that share expression patterns with RNU1-139P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-139P Gene

Orthologs for RNU1-139P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-139P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22126 34
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U1 34
  • 81 (a)
ManyToMany
Species where no ortholog for RNU1-139P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-139P Gene

ENSEMBL:
Gene Tree for RNU1-139P (if available)
TreeFam:
Gene Tree for RNU1-139P (if available)

Paralogs for RNU1-139P Gene

No data available for Paralogs for RNU1-139P Gene

Variants for RNU1-139P Gene

Additional Variant Information for RNU1-139P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-139P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-139P Gene

Disorders for RNU1-139P Gene

No disorders were found for RNU1-139P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-139P Gene

Publications for RNU1-139P Gene

No publications were found for RNU1-139P Gene.

Products for RNU1-139P Gene

Sources for RNU1-139P Gene

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