Aliases for RNU1-133P Gene

Aliases for RNU1-133P Gene

  • RNA, U1 Small Nuclear 133, Pseudogene 2 3 5

External Ids for RNU1-133P Gene

Previous GeneCards Identifiers for RNU1-133P Gene

  • GC02P201645
  • GC00U934606

Summaries for RNU1-133P Gene

GeneCards Summary for RNU1-133P Gene

RNU1-133P (RNA, U1 Small Nuclear 133, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-133P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-133P Gene

Genomics for RNU1-133P Gene

GeneHancer (GH) Regulatory Elements for RNU1-133P Gene

Promoters and enhancers for RNU1-133P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J200745 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 12.5 -27.1 -27132 5.1 ZSCAN5C TCF12 POLR2G NCOR1 FOS ZNF639 KDM6A TCF7 FOXA1 TRIM28 RNU1-133P BZW1 BZW1-AS1 AOX1 PPIL3 FLACC1 lnc-BZW1-3 LINC01792 AOX2P AOX3P-AOX2P
GH02J200740 Promoter/Enhancer 1.2 Ensembl ENCODE 12.4 -33.6 -33647 2.4 ZNF217 POLR2G NCOR1 TEAD4 KDM6A FOXA1 ZBTB7A TEAD1 TBX3 ZKSCAN8 RNU1-133P FLACC1 LINC01792 lnc-BZW1-3 lnc-AOX1-1 AOX2P AOX3P-AOX2P
GH02J200735 Enhancer 0.9 Ensembl ENCODE 11.8 -39.2 -39183 2.8 ZNF217 CTCF ZSCAN5C TEAD4 REST RAD21 SKI TEAD1 SMC3 OSR2 LINC01792 RNU1-133P BZW1 BZW1-AS1 AOX1 lnc-BZW1-3 AOX2P AOX3P-AOX2P lnc-AOX1-1
GH02J200751 Enhancer 0.6 Ensembl 13.4 -23.4 -23383 1.6 RBM25 GATA3 FOXA1 ZMYM3 ZNF768 RXRA HNF4A HDAC2 SMARCE1 SP1 lnc-BZW1-3 RNU1-133P BZW1 BZW1-AS1 AOX1 PPIL3 CASP8 RF00003-042 AOX2P
GH02J200753 Enhancer 0.3 Ensembl 13.4 -22.1 -22083 0.2 GLIS1 ZNF770 lnc-BZW1-3 RNU1-133P BZW1 BZW1-AS1 AOX1 CASP8 FLACC1 RF00003-042 AOX2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-133P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-133P Gene

Genomic Locations for RNU1-133P Gene
chr2:200,775,584-200,775,750
(GRCh38/hg38)
Size:
167 bases
Orientation:
Plus strand

Genomic View for RNU1-133P Gene

Genes around RNU1-133P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-133P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-133P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-133P Gene

Proteins for RNU1-133P Gene

Post-translational modifications for RNU1-133P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-133P Gene

Domains & Families for RNU1-133P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-133P Gene

Function for RNU1-133P Gene

Phenotypes From GWAS Catalog for RNU1-133P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-133P Gene

Localization for RNU1-133P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-133P Gene

Pathways & Interactions for RNU1-133P Gene

PathCards logo

SuperPathways for RNU1-133P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU1-133P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-133P Gene

Drugs & Compounds for RNU1-133P Gene

No Compound Related Data Available

Transcripts for RNU1-133P Gene

mRNA/cDNA for RNU1-133P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-133P Gene

No ASD Table

Relevant External Links for RNU1-133P Gene

GeneLoc Exon Structure for
RNU1-133P

Expression for RNU1-133P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-133P Gene

genes like me logo Genes that share expression patterns with RNU1-133P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-133P Gene

Orthologs for RNU1-133P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU1-133P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 31
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24200 31
  • 75 (a)
OneToMany
Gm25914 31
  • 69 (a)
OneToMany
Gm25421 31
  • 66 (a)
OneToMany
Gm24671 31
  • 66 (a)
OneToMany
Gm26290 31
  • 65 (a)
OneToMany
Gm25489 31
  • 65 (a)
OneToMany
Gm22891 31
  • 65 (a)
OneToMany
Gm24725 31
  • 64 (a)
OneToMany
Gm24959 31
  • 64 (a)
OneToMany
Gm23000 31
  • 64 (a)
OneToMany
Gm22507 31
  • 62 (a)
OneToMany
Gm25699 31
  • 62 (a)
OneToMany
Gm22082 31
  • 61 (a)
OneToMany
Gm24692 31
  • 60 (a)
OneToMany
Gm23050 31
  • 60 (a)
OneToMany
Gm25730 31
  • 59 (a)
OneToMany
Gm26057 31
  • 59 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U1 31
  • 67 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U1 31
  • 65 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U1 31
  • 59 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U1 31
  • 45 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U1 31
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U1 31
  • 64 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii U1 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31
  • 61 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U1 31
  • 55 (a)
OneToMany
Species where no ortholog for RNU1-133P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU1-133P Gene

ENSEMBL:
Gene Tree for RNU1-133P (if available)
TreeFam:
Gene Tree for RNU1-133P (if available)

Paralogs for RNU1-133P Gene

No data available for Paralogs for RNU1-133P Gene

Variants for RNU1-133P Gene

Additional Variant Information for RNU1-133P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-133P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-133P Gene

Disorders for RNU1-133P Gene

No disorders were found for RNU1-133P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-133P Gene

Publications for RNU1-133P Gene

No publications were found for RNU1-133P Gene.

No data available for Mastermind for RNU1-133P Gene

Products for RNU1-133P Gene

Sources for RNU1-133P Gene