Aliases for RNU1-123P Gene

Aliases for RNU1-123P Gene

  • RNA, U1 Small Nuclear 123, Pseudogene 2 3 5

External Ids for RNU1-123P Gene

Previous GeneCards Identifiers for RNU1-123P Gene

  • GC16M067427
  • GC00U934839

Summaries for RNU1-123P Gene

GeneCards Summary for RNU1-123P Gene

RNU1-123P (RNA, U1 Small Nuclear 123, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-123P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-123P Gene

Genomics for RNU1-123P Gene

GeneHancer (GH) Regulatory Elements for RNU1-123P Gene

Promoters and enhancers for RNU1-123P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J067345 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 11.7 +44.5 44514 2.5 TCF12 EP300 CEBPB JUN GATA3 FOXA1 FOS RFX5 STAT3 RXRA LRRC36 ATP6V0D1 RNU1-123P TPPP3 PLEKHG4 ZDHHC1 HSD11B2 LRRC29 TMEM208 ELMO3
GH16J067362 Enhancer 1 Ensembl ENCODE 11.7 +26.0 25974 4.6 ZSCAN5C TCF12 USF1 NCOR1 CTCF TCF7 TRIM28 TGIF2 SKI TBX3 LRRC36 RNU1-123P TPPP3 PLEKHG4 ZDHHC1 HSD11B2 DPEP2 PRMT7 RF00003-031 HSALNG0112196
GH16J067294 Enhancer 0.7 Ensembl ENCODE 10.3 +94.7 94723 2.5 FOS ZNF341 CTCF STAT1 TCF7L2 HLF MYC MAZ SMC3 CEBPB piR-35713 LRRC36 ZDHHC1 HSD11B2 LRRC29 TMEM208 RNU1-123P TPPP3 piR-60674 KCTD19
GH16J067389 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.6 -4558 12.4 EP300 CTCF TEAD4 ZNF10 ZIC2 REST ZBTB11 TAF7 GABPA KLF4 TPPP3 lnc-TPPP3-1 LRRC36 ATP6V0D1 FHOD1 ZDHHC1 HSD11B2 PLEKHG4 ENSG00000260465 PRMT7
GH16J067378 Enhancer 0.5 Ensembl ENCODE 0.4 +12.0 11960 0.2 BHLHE40 USF2 ZDHHC1 PLEKHG4 HSD11B2 RNU1-123P RF00003-031 HSALNG0112196 LRRC36
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-123P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-123P Gene

Genomic Locations for RNU1-123P Gene
chr16:67,390,691-67,390,850
(GRCh38/hg38)
Size:
160 bases
Orientation:
Minus strand

Genomic View for RNU1-123P Gene

Genes around RNU1-123P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-123P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-123P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-123P Gene

Proteins for RNU1-123P Gene

Post-translational modifications for RNU1-123P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-123P Gene

Domains & Families for RNU1-123P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-123P Gene

Function for RNU1-123P Gene

Phenotypes From GWAS Catalog for RNU1-123P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-123P Gene

Localization for RNU1-123P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-123P Gene

Pathways & Interactions for RNU1-123P Gene

PathCards logo

SuperPathways for RNU1-123P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU1-123P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-123P Gene

Drugs & Compounds for RNU1-123P Gene

No Compound Related Data Available

Transcripts for RNU1-123P Gene

mRNA/cDNA for RNU1-123P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-123P Gene

No ASD Table

Relevant External Links for RNU1-123P Gene

GeneLoc Exon Structure for
RNU1-123P

Expression for RNU1-123P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-123P Gene

genes like me logo Genes that share expression patterns with RNU1-123P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-123P Gene

Orthologs for RNU1-123P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-123P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U1 31
  • 67 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U1 31
  • 64 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia U1 31 31 31
  • 64 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25682 31
  • 64 (a)
OneToOne
Species where no ortholog for RNU1-123P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-123P Gene

ENSEMBL:
Gene Tree for RNU1-123P (if available)
TreeFam:
Gene Tree for RNU1-123P (if available)

Paralogs for RNU1-123P Gene

No data available for Paralogs for RNU1-123P Gene

Variants for RNU1-123P Gene

Additional Variant Information for RNU1-123P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-123P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-123P Gene

Disorders for RNU1-123P Gene

No disorders were found for RNU1-123P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-123P Gene

Publications for RNU1-123P Gene

No publications were found for RNU1-123P Gene.

No data available for Mastermind for RNU1-123P Gene

Products for RNU1-123P Gene

Sources for RNU1-123P Gene