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Aliases for RNU1-11P Gene

Aliases for RNU1-11P Gene

  • RNA, U1 Small Nuclear 11, Pseudogene 2 3 5
  • RNA, U1 Small Nuclear Pseudogene 5 2 3
  • RNA, U1 Small Nuclear 11 (Pseudogene) 2
  • RNU1P1 3
  • RNU1P5 3
  • U1P1A 3

External Ids for RNU1-11P Gene

Previous HGNC Symbols for RNU1-11P Gene

  • RNU1P5

Previous GeneCards Identifiers for RNU1-11P Gene

  • GC01U902398

Summaries for RNU1-11P Gene

GeneCards Summary for RNU1-11P Gene

RNU1-11P (RNA, U1 Small Nuclear 11, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-11P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU1-11P Gene

Genomics for RNU1-11P Gene

GeneHancer (GH) Regulatory Elements for RNU1-11P Gene

Promoters and enhancers for RNU1-11P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J013214 Enhancer 0.2 Ensembl 650.7 +0.1 61 0.2 RNU1-11P GC06P013216 LOC105374933 PHACTR1
GH06J013872 Enhancer 1.3 Ensembl ENCODE 14.6 +659.5 659532 2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF143 ZNF548 ENSG00000233981 ENSG00000234540 RNU1-11P RANBP9 NOL7 RNF182 MCUR1 PIR49028 ENSG00000272209
GH06J013258 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12 +46.9 46892 4.3 HDGF PKNOX1 RB1 STAT5A BMI1 BATF KLF5 IRF4 ZNF207 ATF7 TBC1D7 RNU1-11P LOC100130357 PHACTR1 GFOD1 RANBP9 PIR62166 LOC105374933
GH06J013307 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +93.8 93756 1.6 CAVIN1 CEBPB REST ZNF592 SP1 MEF2D SMARCA4 HMBOX1 ZNF24 ZBTB33 TBC1D7 ENSG00000272379 RNU1-11P GFOD1 GC06P013319 LOC100130357
GH06J013152 Enhancer 0.4 ENCODE 0.2 -61.2 -61169 0.7 ZFHX2 EGR2 PIR59120 RNU1-11P PHACTR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-11P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-11P Gene

Genomic Locations for RNU1-11P Gene
216 bases
Plus strand
216 bases
Plus strand

Genomic View for RNU1-11P Gene

Genes around RNU1-11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-11P Gene

Function for RNU1-11P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-11P Gene

Localization for RNU1-11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-11P Gene

Pathways & Interactions for RNU1-11P Gene

SuperPathways for RNU1-11P Gene

No Data Available

Interacting Proteins for RNU1-11P Gene

Gene Ontology (GO) - Biological Process for RNU1-11P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU1-11P Gene

Drugs & Compounds for RNU1-11P Gene

No Compound Related Data Available

Transcripts for RNU1-11P Gene

mRNA/cDNA for RNU1-11P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-11P Gene

No ASD Table

Relevant External Links for RNU1-11P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU1-11P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-11P Gene

mRNA differential expression in normal tissues according to GTEx for RNU1-11P Gene

This gene is overexpressed in Testis (x12.6) and Brain - Cerebellar Hemisphere (x7.3).
genes like me logo Genes that share expression patterns with RNU1-11P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-11P Gene

Orthologs for RNU1-11P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-11P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
(Monodelphis domestica)
Mammalia U1 34
  • 92 (a)
(Bos Taurus)
Mammalia U1 34
  • 86 (a)
Species where no ortholog for RNU1-11P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-11P Gene

Gene Tree for RNU1-11P (if available)
Gene Tree for RNU1-11P (if available)

Paralogs for RNU1-11P Gene

No data available for Paralogs for RNU1-11P Gene

Variants for RNU1-11P Gene

Additional Variant Information for RNU1-11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-11P Gene

Disorders for RNU1-11P Gene

Additional Disease Information for RNU1-11P

Genetic Association Database

No disorders were found for RNU1-11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU1-11P Gene

Publications for RNU1-11P Gene

  1. Characterization of small nuclear RNA U1 gene candidates and pseudogenes from the human genome. (PMID: 6180116) Manser T … Gesteland RF (Journal of molecular and applied genetics 1981) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  3. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs JB … Dupuis J (BMC medical genetics 2007) 44 58
  4. Direct repeats flank three small nuclear RNA pseudogenes in the human genome. (PMID: 6173130) Van Arsdell SW … Gesteland RF (Cell 1981) 3 58

Products for RNU1-11P Gene

Sources for RNU1-11P Gene

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