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Aliases for RNU1-115P Gene

Subcategory (RNA class) for RNU1-115P Gene


Aliases for RNU1-115P Gene

  • RNA, U1 Small Nuclear 115, Pseudogene 2 3 5

External Ids for RNU1-115P Gene

ORGUL Members for RNU1-115P Gene

Previous GeneCards Identifiers for RNU1-115P Gene

  • GC0XM132374
  • GC00U935336

Summaries for RNU1-115P Gene

GeneCards Summary for RNU1-115P Gene

RNU1-115P (RNA, U1 Small Nuclear 115, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU1-115P Gene

  • U1 spliceosomal RNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV [1]. This family does not contain the larger yeast sequences.

Additional gene information for RNU1-115P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU1-115P Gene

Genomics for RNU1-115P Gene

GeneHancer (GH) Regulatory Elements for RNU1-115P Gene

Promoters and enhancers for RNU1-115P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ133229 Enhancer 0.7 ENCODE 0.4 +9.2 9238 0.1 SMARCE1 PKNOX1 JUN TSHZ1 ZEB1 ZNF507 GATA3 JUND PRDM6 MTA1 PIR41819 RNU1-115P GC0XM133239
GH0XJ133250 Enhancer 0.6 ENCODE 0.4 -11.9 -11893 0.6 FOXA2 FOXA3 CEBPG ZNF644 TEAD3 CEBPA BCL6 HNF4A FOXP1 RNU1-115P GC0XM133239 GPC4
GH0XJ133411 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.1 -175.4 -175392 4.7 PKNOX1 ZNF2 ZNF335 GLIS2 SCRT2 SP3 ZBTB11 ZEB2 ELF1 ZNF217 GPC4 RNU1-115P GC0XM133239
GH0XJ133264 Enhancer 0.4 ENCODE 0.3 -26.6 -26630 1.2 SP1 CTBP2 GPC4 RNU1-115P GC0XM133239
GH0XJ133323 Enhancer 0.4 Ensembl 0.2 -84.7 -84685 0.6 MAFG NFE2 GPC4 GC0XM133239 RNU1-115P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU1-115P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU1-115P Gene

Genomic Locations for RNU1-115P Gene
160 bases
Minus strand

Genomic View for RNU1-115P Gene

Genes around RNU1-115P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-115P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-115P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-115P Gene

Proteins for RNU1-115P Gene

Post-translational modifications for RNU1-115P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-115P Gene

Domains & Families for RNU1-115P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU1-115P Gene

Function for RNU1-115P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-115P Gene

Localization for RNU1-115P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-115P Gene

Pathways & Interactions for RNU1-115P Gene

SuperPathways for RNU1-115P Gene

No Data Available

Interacting Proteins for RNU1-115P Gene

Gene Ontology (GO) - Biological Process for RNU1-115P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU1-115P Gene

Drugs & Compounds for RNU1-115P Gene

No Compound Related Data Available

Transcripts for RNU1-115P Gene

mRNA/cDNA for RNU1-115P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-115P Gene

No ASD Table

Relevant External Links for RNU1-115P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU1-115P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU1-115P Gene

genes like me logo Genes that share expression patterns with RNU1-115P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-115P Gene

Orthologs for RNU1-115P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU1-115P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U1 34
  • 99 (a)
(Ornithorhynchus anatinus)
Mammalia U1 34
  • 71 (a)
Species where no ortholog for RNU1-115P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU1-115P Gene

Gene Tree for RNU1-115P (if available)
Gene Tree for RNU1-115P (if available)

Paralogs for RNU1-115P Gene

No data available for Paralogs for RNU1-115P Gene

Variants for RNU1-115P Gene

Additional Variant Information for RNU1-115P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-115P Gene

Disorders for RNU1-115P Gene

No disorders were found for RNU1-115P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-115P Gene

Publications for RNU1-115P Gene

No publications were found for RNU1-115P Gene.

Products for RNU1-115P Gene

Sources for RNU1-115P Gene

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