Aliases for RNU1-105P Gene

Aliases for RNU1-105P Gene

  • RNA, U1 Small Nuclear 105, Pseudogene 2 3 5
  • RNU1-105P 5

External Ids for RNU1-105P Gene

Previous GeneCards Identifiers for RNU1-105P Gene

  • GC06P047793
  • GC00U935598
  • GC06P048107

Summaries for RNU1-105P Gene

GeneCards Summary for RNU1-105P Gene

RNU1-105P (RNA, U1 Small Nuclear 105, Pseudogene) is a Pseudogene.

Additional gene information for RNU1-105P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU1-105P Gene

Genomics for RNU1-105P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU1-105P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J047787 Enhancer 0.8 ENCODE 11.4 -34.5 -34535 2.2 CTCF REST TRIM22 SMAD4 RXRA EBF1 SMC3 RAD21 RARA ZNF843 RNU1-105P NONHSAG043899.2 OPN5 PTCHD4
GH06J048765 Enhancer 0.8 Ensembl ENCODE 9.9 +942.4 942429 2.8 CTCF SIX4 CEBPB EP300 SMC3 RAD21 TBP JUND ZNF384 ARID3A PTCHD4 RNU1-105P CENPQ MMUT piR-39655-006 HSALNG0050465 ENSG00000287137
GH06J048037 Enhancer 0.6 FANTOM5 Ensembl 9.3 +214.4 214411 1.6 FOXA2 NFE2 NFE2L2 SPI1 PTCHD4 RNU1-105P piR-40110-592 HSALNG0050440 HSALNG0050438 OPN5
GH06J048080 Enhancer 0.4 Ensembl 9.9 +257.5 257510 0.6 RBM22 ZNF792 GATAD2A HSALNG0050442 RNU1-105P HSALNG0050444 PTCHD4 ENSG00000286811 OPN5
GH06J047788 Promoter 0.3 EPDnew 10.7 -36.3 -36331 0.1 OPN5 RNU1-105P NONHSAG043899.2 PTCHD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU1-105P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU1-105P Gene

Latest Assembly
chr6:47,823,390-47,823,550
(GRCh38/hg38)
Size:
161 bases
Orientation:
Plus strand

Previous Assembly
chr6:47,791,126-47,791,286
(GRCh37/hg19 by Entrez Gene)
Size:
161 bases
Orientation:
Plus strand

chr6:47,791,126-47,791,286
(GRCh37/hg19 by Ensembl)
Size:
161 bases
Orientation:
Plus strand

Genomic View for RNU1-105P Gene

Genes around RNU1-105P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU1-105P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU1-105P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU1-105P Gene

Proteins for RNU1-105P Gene

Post-translational modifications for RNU1-105P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU1-105P Gene

Domains & Families for RNU1-105P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU1-105P Gene

Function for RNU1-105P Gene

Phenotypes From GWAS Catalog for RNU1-105P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU1-105P Gene

Localization for RNU1-105P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU1-105P Gene

Pathways & Interactions for RNU1-105P Gene

PathCards logo

SuperPathways for RNU1-105P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU1-105P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU1-105P Gene

Drugs & Compounds for RNU1-105P Gene

No Compound Related Data Available

Transcripts for RNU1-105P Gene

mRNA/cDNA for RNU1-105P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU1-105P Gene

No ASD Table

Relevant External Links for RNU1-105P Gene

GeneLoc Exon Structure for
RNU1-105P

Expression for RNU1-105P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU1-105P Gene

genes like me logo Genes that share expression patterns with RNU1-105P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU1-105P Gene

Orthologs for RNU1-105P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU1-105P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U1 31
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25704 31
  • 67 (a)
OneToMany
Species where no ortholog for RNU1-105P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU1-105P Gene

ENSEMBL:
Gene Tree for RNU1-105P (if available)
TreeFam:
Gene Tree for RNU1-105P (if available)

Paralogs for RNU1-105P Gene

No data available for Paralogs for RNU1-105P Gene

Variants for RNU1-105P Gene

Additional Variant Information for RNU1-105P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU1-105P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU1-105P Gene

Disorders for RNU1-105P Gene

No disorders were found for RNU1-105P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU1-105P Gene

Publications for RNU1-105P Gene

No publications were found for RNU1-105P Gene.

No data available for Mastermind for RNU1-105P Gene

Products for RNU1-105P Gene

Sources for RNU1-105P Gene