Aliases for RNFT1-DT Gene

Subcategory (RNA class) for RNFT1-DT Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for RNFT1-DT Gene

  • RNFT1 Divergent Transcript 2 3 5
  • HSALNG0117808 169
  • Lnc-RPS6KB1-1 170
  • NONHSAG022372 94
  • RNFT1-DT 2

External Ids for RNFT1-DT Gene

Summaries for RNFT1-DT Gene

GeneCards Summary for RNFT1-DT Gene

RNFT1-DT (RNFT1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RNFT1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNFT1-DT Gene

Genomics for RNFT1-DT Gene

GeneHancer (GH) Regulatory Elements for RNFT1-DT Gene

Promoters and enhancers for RNFT1-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNFT1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNFT1-DT Gene

Genomic Locations for RNFT1-DT Gene
chr17:59,964,832-59,996,972
(GRCh38/hg38)
Size:
32,141 bases
Orientation:
Plus strand
chr17:58,042,193-58,074,333
(GRCh37/hg19)
Size:
32,141 bases
Orientation:
Plus strand

Genomic View for RNFT1-DT Gene

Genes around RNFT1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNFT1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNFT1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNFT1-DT Gene

Proteins for RNFT1-DT Gene

Post-translational modifications for RNFT1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNFT1-DT Gene

Domains & Families for RNFT1-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNFT1-DT Gene

Function for RNFT1-DT Gene

Phenotypes From GWAS Catalog for RNFT1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNFT1-DT Gene

Localization for RNFT1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNFT1-DT Gene

Pathways & Interactions for RNFT1-DT Gene

PathCards logo

SuperPathways for RNFT1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNFT1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNFT1-DT Gene

Drugs & Compounds for RNFT1-DT Gene

No Compound Related Data Available

Transcripts for RNFT1-DT Gene

mRNA/cDNA for RNFT1-DT Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(5) RNACentral transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RNFT1-DT Gene

No ASD Table

Relevant External Links for RNFT1-DT Gene

GeneLoc Exon Structure for
RNFT1-DT
ECgene alternative splicing isoforms for
RNFT1-DT

Expression for RNFT1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNFT1-DT Gene

Orthologs for RNFT1-DT Gene

Evolution for RNFT1-DT Gene

ENSEMBL:
Gene Tree for RNFT1-DT (if available)
TreeFam:
Gene Tree for RNFT1-DT (if available)

No data available for Orthologs for RNFT1-DT Gene

Paralogs for RNFT1-DT Gene

No data available for Paralogs for RNFT1-DT Gene

Variants for RNFT1-DT Gene

Sequence variations from dbSNP and Humsavar for RNFT1-DT Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000035832 -- 59,992,875(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000155753 -- 59,978,481(+) C/A genic_downstream_transcript_variant, intron_variant
rs1000186612 -- 59,990,140(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000253871 -- 59,987,793(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000280275 -- 59,971,369(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNFT1-DT Gene

Variant ID Type Subtype PubMed ID
esv2676797 CNV deletion 23128226
esv2758700 CNV gain+loss 17122850
esv3640916 CNV loss 21293372
nsv428348 CNV gain 18775914
nsv471702 CNV gain 15918152
nsv833502 CNV gain 17160897
nsv960130 CNV duplication 23825009
nsv962348 CNV duplication 23825009

Additional Variant Information for RNFT1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNFT1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNFT1-DT Gene

Disorders for RNFT1-DT Gene

Additional Disease Information for RNFT1-DT

No disorders were found for RNFT1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNFT1-DT Gene

Publications for RNFT1-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for RNFT1-DT Gene

Products for RNFT1-DT Gene

Sources for RNFT1-DT Gene