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Aliases for RNFT1-DT Gene

Subcategory (RNA class) for RNFT1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNFT1-DT Gene

  • RNFT1 Divergent Transcript 2 3
  • AC005702.1 5

External Ids for RNFT1-DT Gene

Summaries for RNFT1-DT Gene

GeneCards Summary for RNFT1-DT Gene

RNFT1-DT (RNFT1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNFT1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNFT1-DT Gene

Genomics for RNFT1-DT Gene

GeneHancer (GH) Regulatory Elements for RNFT1-DT Gene

Promoters and enhancers for RNFT1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I059963 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 568.2 -0.3 -332 2.1 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 SP5 RNFT1-DT RNFT1 SMG8 PPM1D TUBD1 HEATR6 NDUFB8P2 ENSG00000274378 DHX40 ENSG00000267318
GH17I059824 Promoter/Enhancer 2.8 VISTA FANTOM5 Ensembl ENCODE dbSUPER 16.7 -121.9 -121946 36.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 GC17P059842 GC17P059843 GC17P059844 GC17P059845 GC17M059841 GC17M059842 GC17M059843 MIR21 PPM1D TUBD1
GH17I059781 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 16.4 -177.2 -177158 11.9 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 RPS6KB1 TUBD1 HEATR6 PPM1D RNFT1-DT SKA2 LOC100996660 MIR21 RNU6-450P TRIM37
GH17I059705 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14 -257.0 -256959 5.2 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 E2F8 SP3 NFYC GLIS1 PTRH2 VMP1 PPM1D RPS6KB1 TUBD1 RNFT1 SKA2 NDUFB8P2 RNFT1-DT LOC100996660
GH17I059751 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.9 -203.3 -203348 20.4 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A YBX1 FEZF1 RPS6KB1 TUBD1 NDUFB8P2 APPBP2 RNFT1-DT ENSG00000274378 PPM1D ENSG00000224738 MIR21 RNU6-450P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNFT1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNFT1-DT Gene

Genomic Locations for RNFT1-DT Gene
chr17:59,964,832-59,996,972
(GRCh38/hg38)
Size:
32,141 bases
Orientation:
Plus strand
chr17:58,042,193-58,074,333
(GRCh37/hg19)

Genomic View for RNFT1-DT Gene

Genes around RNFT1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNFT1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNFT1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNFT1-DT Gene

Proteins for RNFT1-DT Gene

Post-translational modifications for RNFT1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNFT1-DT Gene

Domains & Families for RNFT1-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNFT1-DT Gene

Function for RNFT1-DT Gene

Phenotypes From GWAS Catalog for RNFT1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNFT1-DT Gene

Localization for RNFT1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNFT1-DT Gene

Pathways & Interactions for RNFT1-DT Gene

SuperPathways for RNFT1-DT Gene

No Data Available

Interacting Proteins for RNFT1-DT Gene

Gene Ontology (GO) - Biological Process for RNFT1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNFT1-DT Gene

Drugs & Compounds for RNFT1-DT Gene

No Compound Related Data Available

Transcripts for RNFT1-DT Gene

mRNA/cDNA for RNFT1-DT Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNFT1-DT Gene

No ASD Table

Relevant External Links for RNFT1-DT Gene

GeneLoc Exon Structure for
RNFT1-DT
ECgene alternative splicing isoforms for
RNFT1-DT

Expression for RNFT1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNFT1-DT Gene

Orthologs for RNFT1-DT Gene

Evolution for RNFT1-DT Gene

ENSEMBL:
Gene Tree for RNFT1-DT (if available)
TreeFam:
Gene Tree for RNFT1-DT (if available)

No data available for Orthologs for RNFT1-DT Gene

Paralogs for RNFT1-DT Gene

No data available for Paralogs for RNFT1-DT Gene

Variants for RNFT1-DT Gene

Sequence variations from dbSNP and Humsavar for RNFT1-DT Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000035832 -- 59,992,875(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000155753 -- 59,978,481(+) C/A genic_downstream_transcript_variant, intron_variant
rs1000186612 -- 59,990,140(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000253871 -- 59,987,793(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000280275 -- 59,971,369(+) G/T intron_variant

Additional Variant Information for RNFT1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNFT1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNFT1-DT Gene

Disorders for RNFT1-DT Gene

No disorders were found for RNFT1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNFT1-DT Gene

Publications for RNFT1-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RNFT1-DT Gene

Sources for RNFT1-DT Gene

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