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Aliases for RNF227 Gene

Aliases for RNF227 Gene

  • Ring Finger Protein 227 2 3
  • Long Intergenic Non-Protein Coding RNA 2581 2 3 5
  • LINC02581 3 5
  • Putative Uncharacterized Protein FLJ38447 3

External Ids for RNF227 Gene

Previous HGNC Symbols for RNF227 Gene

  • LINC02581

Summaries for RNF227 Gene

GeneCards Summary for RNF227 Gene

RNF227 (Ring Finger Protein 227) is a Protein Coding gene.

Additional gene information for RNF227 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF227 Gene

Genomics for RNF227 Gene

GeneHancer (GH) Regulatory Elements for RNF227 Gene

Promoters and enhancers for RNF227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I007914 Promoter/Enhancer 1.5 Ensembl ENCODE 559.5 +0.3 335 2.9 PKNOX1 ARNT SIN3A DMAP1 ZNF2 SLC30A9 ZNF766 ZNF213 ZNF207 ZNF143 RNF227 PIR53872 CTC1 CNTROB WRAP53 KDM6B POLR2A DVL2 SNORD10 PFAS
GH17I007931 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 6.1 -16.2 -16216 2.8 HDGF PKNOX1 SMAD1 FOXA2 ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 CNTROB ENSG00000262730 TRAPPC1 PFAS DVL2 CYB5D1 SCARNA21 CHD3 SENP3 CTC1
GH17I008016 Promoter/Enhancer 1.6 Ensembl ENCODE 6.5 -102.2 -102159 4.5 ZNF2 YY1 GLIS2 ZNF143 KLF7 SP3 RXRA YY2 REST GLIS1 KCNAB3 CNTROB NLGN2 ATP1B2 DLG4 VAMP2 ALOX15B TRAPPC1 PFAS NAA38
GH17I007929 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 6.4 -13.6 -13629 1 HDGF PKNOX1 POLR2A BACH1 ZBTB33 EZH2 KCNAB3 ENSG00000262730 RNF227 TRAPPC1
GH17I008002 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 6.5 -86.9 -86903 2.4 SUZ12 IKZF1 CEBPA HNF4G HNF4A DPF2 IKZF2 SPI1 EZH2 GUCY2D KCNAB3 RNF227 ENSG00000279174
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF227 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF227 Gene

Genomic Locations for RNF227 Gene
chr17:7,913,322-7,916,276
(GRCh38/hg38)
Size:
2,955 bases
Orientation:
Minus strand
chr17:7,816,640-7,819,271
(GRCh37/hg19)

Genomic View for RNF227 Gene

Genes around RNF227 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF227 Gene

Proteins for RNF227 Gene

  • Protein details for RNF227 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NIN4-YQ014_HUMAN
    Recommended name:
    Putative uncharacterized protein FLJ38447
    Protein Accession:
    A6NIN4

    Protein attributes for RNF227 Gene

    Size:
    97 amino acids
    Molecular mass:
    10921 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNF227 Gene

Post-translational modifications for RNF227 Gene

No Post-translational modifications

Other Protein References for RNF227 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF227 Gene

Domains & Families for RNF227 Gene

Gene Families for RNF227 Gene

Protein Domains for RNF227 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF227: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF227 Gene

Function for RNF227 Gene

Phenotypes for RNF227 Gene

GenomeRNAi human phenotypes for RNF227:
genes like me logo Genes that share phenotypes with RNF227: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF227 Gene

Localization for RNF227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF227 Gene

Pathways & Interactions for RNF227 Gene

SuperPathways for RNF227 Gene

No Data Available

Interacting Proteins for RNF227 Gene

Gene Ontology (GO) - Biological Process for RNF227 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF227 Gene

Drugs & Compounds for RNF227 Gene

No Compound Related Data Available

Transcripts for RNF227 Gene

mRNA/cDNA for RNF227 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF227 Gene

No ASD Table

Relevant External Links for RNF227 Gene

GeneLoc Exon Structure for
RNF227
ECgene alternative splicing isoforms for
RNF227

Expression for RNF227 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF227 Gene

Orthologs for RNF227 Gene

Evolution for RNF227 Gene

ENSEMBL:
Gene Tree for RNF227 (if available)
TreeFam:
Gene Tree for RNF227 (if available)

No data available for Orthologs for RNF227 Gene

Paralogs for RNF227 Gene

No data available for Paralogs for RNF227 Gene

Variants for RNF227 Gene

Sequence variations from dbSNP and Humsavar for RNF227 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000513172 -- 7,914,668(-) A/G non_coding_transcript_variant
rs1000570247 -- 7,915,123(-) G/T non_coding_transcript_variant
rs1001115353 -- 7,914,246(-) T/A non_coding_transcript_variant
rs1001125222 -- 7,914,490(-) T/C non_coding_transcript_variant
rs1001518340 -- 7,913,296(-) C/T downstream_transcript_variant

Additional Variant Information for RNF227 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF227

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNF227 Gene

Disorders for RNF227 Gene

No disorders were found for RNF227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNF227 Gene

Publications for RNF227 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58

Products for RNF227 Gene

Sources for RNF227 Gene

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