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Aliases for RNF219-AS1 Gene

Subcategory (RNA class) for RNF219-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RNF219-AS1 Gene

  • RNF219 Antisense RNA 1 2 3 5
  • POU4F1 Antisense RNA 1 (Non-Protein Coding) 3
  • POU4F1 Antisense RNA 1 2
  • POU4F1-AS1 3

External Ids for RNF219-AS1 Gene

Previous HGNC Symbols for RNF219-AS1 Gene

  • POU4F1-AS1

Previous GeneCards Identifiers for RNF219-AS1 Gene

  • GC13P079154
  • GC13P078495
  • GC13P078497

Summaries for RNF219-AS1 Gene

GeneCards Summary for RNF219-AS1 Gene

RNF219-AS1 (RNF219 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNF219-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF219-AS1 Gene

Genomics for RNF219-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNF219-AS1 Gene

Promoters and enhancers for RNF219-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J077910 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.7 -4.3 -4296 10.3 PKNOX1 USF1 ZIC2 RAD21 ZNF335 GLIS2 POLR2A ZBTB48 PRDM10 ZBTB10 EDNRB LINC01069 RNF219-AS1 GC13M077919 GC13M077918 EDNRB-AS1
GH13J077974 Promoter/Enhancer 0.7 EPDnew ENCODE 0.2 +56.3 56344 2.3 EDNRB LINC01069 CLN5 RNF219-AS1
GH13J077980 Enhancer 0.7 Ensembl ENCODE 0.2 +61.4 61390 1.5 SP1 JUND BACH1 NR2F2 NFE2L2 LINC01069 EDNRB RNF219-AS1
GH13J078021 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.1 +102.7 102657 1.5 PKNOX1 SMAD1 STAT5A BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 EDNRB LINC00446 PIR49322 RNF219-AS1
GH13J078137 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.1 +218.3 218284 0.5 ELF3 ZNF768 CTCF PKNOX1 IRF4 RAD21 TEAD3 GATA3 GLIS2 SCRT2 GC13M078137 GC13P078199 RNF219-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF219-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF219-AS1 Gene

Genomic Locations for RNF219-AS1 Gene
chr13:77,919,689-78,617,328
(GRCh38/hg38)
Size:
697,640 bases
Orientation:
Plus strand
chr13:78,493,824-79,191,463
(GRCh37/hg19)
Size:
697,640 bases
Orientation:
Plus strand

Genomic View for RNF219-AS1 Gene

Genes around RNF219-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF219-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF219-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF219-AS1 Gene

Proteins for RNF219-AS1 Gene

Post-translational modifications for RNF219-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF219-AS1 Gene

Domains & Families for RNF219-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF219-AS1 Gene

Function for RNF219-AS1 Gene

Phenotypes From GWAS Catalog for RNF219-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF219-AS1 Gene

Localization for RNF219-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF219-AS1 Gene

Pathways & Interactions for RNF219-AS1 Gene

SuperPathways for RNF219-AS1 Gene

No Data Available

Interacting Proteins for RNF219-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF219-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF219-AS1 Gene

Drugs & Compounds for RNF219-AS1 Gene

No Compound Related Data Available

Transcripts for RNF219-AS1 Gene

mRNA/cDNA for RNF219-AS1 Gene

(3) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(14) RNA Central transcripts :

Unigene Clusters for RNF219-AS1 Gene

RNF219 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF219-AS1 Gene

No ASD Table

Relevant External Links for RNF219-AS1 Gene

GeneLoc Exon Structure for
RNF219-AS1
ECgene alternative splicing isoforms for
RNF219-AS1

Expression for RNF219-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF219-AS1 Gene

SOURCE GeneReport for Unigene cluster for RNF219-AS1 Gene:

Hs.493062
genes like me logo Genes that share expression patterns with RNF219-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF219-AS1 Gene

Orthologs for RNF219-AS1 Gene

Evolution for RNF219-AS1 Gene

ENSEMBL:
Gene Tree for RNF219-AS1 (if available)
TreeFam:
Gene Tree for RNF219-AS1 (if available)

No data available for Orthologs for RNF219-AS1 Gene

Paralogs for RNF219-AS1 Gene

No data available for Paralogs for RNF219-AS1 Gene

Variants for RNF219-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF219-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000001126 -- 78,180,495(+) G/C/T intron_variant
rs1000007906 -- 78,217,665(+) G/T intron_variant
rs1000018785 -- 78,132,588(+) C/T intron_variant
rs1000018941 -- 78,500,547(+) A/G intron_variant
rs1000019782 -- 78,536,250(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF219-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3550742 CNV deletion 23714750
esv3550744 CNV deletion 23714750
esv3550745 CNV deletion 23714750
esv3580772 CNV loss 25503493
esv3580773 CNV loss 25503493
esv3632793 CNV loss 21293372
esv3632794 CNV loss 21293372
esv3632795 CNV loss 21293372
esv3632796 CNV gain 21293372
esv3632797 CNV loss 21293372
esv3632798 CNV loss 21293372
esv3892395 CNV loss 25118596
esv3892396 CNV gain 25118596
esv8901 CNV loss 19470904
esv996259 CNV insertion 20482838
nsv1070598 CNV deletion 25765185
nsv1094 CNV deletion 18451855
nsv1095 CNV insertion 18451855
nsv1096 CNV insertion 18451855
nsv1097 CNV insertion 18451855
nsv1110901 OTHER inversion 24896259
nsv1120038 CNV deletion 24896259
nsv1126347 CNV deletion 24896259
nsv983605 CNV duplication 23825009
nsv832654 CNV gain 17160897
nsv826726 CNV gain 20364138
nsv826725 CNV gain 20364138
nsv826722 CNV loss 20364138
nsv64597 CNV deletion 16902084
nsv562413 CNV loss 21841781
nsv562410 CNV loss 21841781
nsv562405 CNV loss 21841781
nsv562396 CNV loss 21841781
nsv525629 CNV loss 19592680
nsv516992 CNV loss 19592680
nsv515727 CNV loss 19592680
nsv510351 OTHER sequence alteration 20534489
nsv507714 OTHER sequence alteration 20534489
nsv478036 CNV novel sequence insertion 20440878
nsv1143598 CNV deletion 24896259
nsv1142833 CNV tandem duplication 24896259
nsv1131061 CNV deletion 24896259
esv3447836 CNV insertion 20981092
esv3429274 CNV insertion 20981092
esv29902 CNV loss 19812545
esv2747699 CNV deletion 23290073
esv27337 CNV loss 19812545
esv2674249 CNV deletion 23128226
esv2672571 CNV deletion 23128226
esv2666370 CNV deletion 23128226
esv2666285 CNV deletion 23128226
esv2661205 CNV deletion 23128226
esv1532663 CNV insertion 17803354
dgv339n67 CNV gain 20364138
dgv3270n54 CNV loss 21841781
dgv3269n54 CNV loss 21841781
dgv3268n54 CNV loss 21841781
dgv3267n54 CNV gain 21841781
dgv3266n54 CNV loss 21841781
dgv3265n54 CNV loss 21841781
dgv3264n54 CNV loss 21841781
dgv234n27 CNV loss 19166990
dgv233n27 CNV gain 19166990
dgv114n21 CNV loss 19592680

Additional Variant Information for RNF219-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF219-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF219-AS1 Gene

Disorders for RNF219-AS1 Gene

Additional Disease Information for RNF219-AS1

No disorders were found for RNF219-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF219-AS1 Gene

Publications for RNF219-AS1 Gene

  1. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. (PMID: 25436638) Malinowski JR … Crawford DC (PloS one 2014) 3 58
  2. Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. (PMID: 24376456) Simino J … Rao DC (Frontiers in genetics 2013) 3 58
  3. Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease. (PMID: 21116278) Furney SJ … AddNeuroMed Consortium (Molecular psychiatry 2011) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RNF219-AS1 Gene

Sources for RNF219-AS1 Gene

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