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Aliases for RNF217-AS1 Gene

Subcategory (RNA class) for RNF217-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF217-AS1 Gene

  • RNF217 Antisense RNA 1 (Head To Head) 2 3 5
  • Six-Twelve Leukemia 2 3
  • STL 3

External Ids for RNF217-AS1 Gene

Summaries for RNF217-AS1 Gene

GeneCards Summary for RNF217-AS1 Gene

RNF217-AS1 (RNF217 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with RNF217-AS1 include Peroneal Neuropathy and Leber Congenital Amaurosis.

Additional gene information for RNF217-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF217-AS1 Gene

Genomics for RNF217-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNF217-AS1 Gene

Promoters and enhancers for RNF217-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I124960 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE 560.5 -0.6 -592 6 HDGF FOXA2 ARNT SIN3A ZNF2 YY1 FOS KLF13 SP3 REST RNF217 RNF217-AS1 GC06P125084
GH06I125013 Enhancer 1.4 FANTOM5 Ensembl ENCODE 29.1 -51.2 -51161 2.4 ATF1 FEZF1 ZNF2 NCOA2 ZNF766 ZNF548 ATF7 KLF13 YY2 ZNF662 TRMT11 RNF217 RNF217-AS1 GC06P125084
GH06I125779 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.5 -818.5 -818459 3.4 DMAP1 IRF4 YY1 ZNF213 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 NCOA7 TRE-CTC1-7 HEY2 CENPW TRMT11 RNF217-AS1 RNF217 NCOA7-AS1
GH06I125810 Enhancer 1.4 Ensembl ENCODE dbSUPER 19.9 -849.2 -849192 2.5 PKNOX1 ARNT FEZF1 ZNF2 ZNF213 ZNF302 E2F8 FOS SP3 JUNB TRMT11 RNF217-AS1 NCOA7-AS1 NCOA7
GH06I124983 Enhancer 0.9 Ensembl ENCODE 12 -21.6 -21570 1.8 SMARCE1 ZNF639 JUN NR2F1 USF2 MAFG ZNF507 MITF JUND ZNF316 RNF217 RNF217-AS1 GC06P125084
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF217-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF217-AS1 Gene

Genomic Locations for RNF217-AS1 Gene
chr6:124,908,243-124,963,039
(GRCh38/hg38)
Size:
54,797 bases
Orientation:
Minus strand
chr6:125,229,389-125,284,185
(GRCh37/hg19)

Genomic View for RNF217-AS1 Gene

Genes around RNF217-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF217-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF217-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF217-AS1 Gene

Proteins for RNF217-AS1 Gene

Post-translational modifications for RNF217-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF217-AS1 Gene

Domains & Families for RNF217-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF217-AS1 Gene

Function for RNF217-AS1 Gene

Phenotypes From GWAS Catalog for RNF217-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF217-AS1 Gene

Localization for RNF217-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNF217-AS1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF217-AS1 Gene

Pathways & Interactions for RNF217-AS1 Gene

SuperPathways for RNF217-AS1 Gene

No Data Available

Interacting Proteins for RNF217-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF217-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF217-AS1 Gene

Drugs & Compounds for RNF217-AS1 Gene

No Compound Related Data Available

Transcripts for RNF217-AS1 Gene

mRNA/cDNA for RNF217-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF217-AS1 Gene

No ASD Table

Relevant External Links for RNF217-AS1 Gene

GeneLoc Exon Structure for
RNF217-AS1
ECgene alternative splicing isoforms for
RNF217-AS1

Expression for RNF217-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF217-AS1 Gene

genes like me logo Genes that share expression patterns with RNF217-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF217-AS1 Gene

Orthologs for RNF217-AS1 Gene

Evolution for RNF217-AS1 Gene

ENSEMBL:
Gene Tree for RNF217-AS1 (if available)
TreeFam:
Gene Tree for RNF217-AS1 (if available)

No data available for Orthologs for RNF217-AS1 Gene

Paralogs for RNF217-AS1 Gene

No data available for Paralogs for RNF217-AS1 Gene

Variants for RNF217-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF217-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000051066 -- 124,926,005(-) G/A/T intron_variant
rs1000080489 -- 124,925,548(-) T/C intron_variant
rs1000088924 -- 124,921,586(-) A/G intron_variant
rs1000117343 -- 124,916,310(-) G/A intron_variant
rs1000170089 -- 124,946,492(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF217-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1029255 CNV gain 25217958
esv275592 CNV gain+loss 21479260
dgv1829e212 CNV gain 25503493

Additional Variant Information for RNF217-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF217-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF217-AS1 Gene

Disorders for RNF217-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for RNF217-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
peroneal neuropathy
  • peroneal neuropathies
leber congenital amaurosis
  • lca
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RNF217-AS1

genes like me logo Genes that share disorders with RNF217-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNF217-AS1 Gene

Publications for RNF217-AS1 Gene

  1. A t(6;12)(q23;p13) results in the fusion of ETV6 to a novel gene, STL, in a B-cell ALL cell line. (PMID: 9087565) Suto Y … Bohlander SK (Genes, chromosomes & cancer 1997) 2 3 22 58
  2. Identification and characterization of OSTL (RNF217) encoding a RING-IBR-RING protein adjacent to a translocation breakpoint involving ETV6 in childhood ALL. (PMID: 25298122) Fontanari Krause LM … Bohlander SK (Scientific reports 2014) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for RNF217-AS1 Gene

Sources for RNF217-AS1 Gene

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