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Aliases for RNF216P1 Gene

Aliases for RNF216P1 Gene

  • Ring Finger Protein 216 Pseudogene 1 2 3 5
  • RNF216L 3 4
  • Ring Finger Protein 216-Like 2
  • HCG2040556 3

External Ids for RNF216P1 Gene

Previous HGNC Symbols for RNF216P1 Gene

  • RNF216L

Previous GeneCards Identifiers for RNF216P1 Gene

  • GC07P005015

Summaries for RNF216P1 Gene

GeneCards Summary for RNF216P1 Gene

RNF216P1 (Ring Finger Protein 216 Pseudogene 1) is a Pseudogene.

Additional gene information for RNF216P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF216P1 Gene

Genomics for RNF216P1 Gene

GeneHancer (GH) Regulatory Elements for RNF216P1 Gene

Promoters and enhancers for RNF216P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J004973 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 711.7 +0.5 467 2 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 RNF216P1 RBAK AP5Z1 RNF216 TNRC18 FOXK1 WIPI2 RBAK-RBAKDN
GH07J005416 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 54.3 +450.0 449996 15.1 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 TNRC18 ENSG00000272953 GC07P005425 USP42 RNF216P1 AP5Z1 ANKRD61 RNF216 RBAK RPL22P16
GH07J005591 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 33.8 +621.5 621468 8.6 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 FSCN1 C7orf26 USP42 AP5Z1 TNRC18 RNF216P1 RPL22P16 ANKRD61 CCZ1 ENSG00000188365
GH07J005523 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 26.1 +555.5 555513 11.1 MLX FEZF1 DMAP1 E2F8 ZNF143 NFYC GLIS1 RCOR2 NBN KDM1A ACTB GC07M005528 GC07M005529 GC07M005530 PIR61399 USP42 ANKRD61 AP5Z1 RNF216 CCZ1
GH07J005780 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 32.3 +807.3 807345 1.9 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B RNF216 C7orf26 ZNF316 USP42 ZNF12 RNF216P1 TNRC18 ANKRD61 RBAK KDELR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF216P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF216P1 Gene

Genomic Locations for RNF216P1 Gene
66,691 bases
Plus strand
66,691 bases
Plus strand

Genomic View for RNF216P1 Gene

Genes around RNF216P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF216P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF216P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF216P1 Gene

Proteins for RNF216P1 Gene

  • Protein details for RNF216P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative protein RNF216-like
    Protein Accession:
    Secondary Accessions:
    • B7Z8S6

    Protein attributes for RNF216P1 Gene

    42 amino acids
    Molecular mass:
    5133 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAH14062.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for RNF216P1 Gene

Post-translational modifications for RNF216P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF216P1 Gene

Domains & Families for RNF216P1 Gene

Protein Domains for RNF216P1 Gene


Suggested Antigen Peptide Sequences for RNF216P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF216P1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for RNF216P1 Gene

Function for RNF216P1 Gene

Phenotypes From GWAS Catalog for RNF216P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF216P1 Gene

Localization for RNF216P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF216P1 Gene

Pathways & Interactions for RNF216P1 Gene

SuperPathways for RNF216P1 Gene

No Data Available

Interacting Proteins for RNF216P1 Gene

Gene Ontology (GO) - Biological Process for RNF216P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNF216P1 Gene

Drugs & Compounds for RNF216P1 Gene

No Compound Related Data Available

Transcripts for RNF216P1 Gene

mRNA/cDNA for RNF216P1 Gene

(10) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF216P1 Gene

Ring finger protein 216 pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF216P1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1: - - -
SP3: -
SP4: - - - - - - - -
SP5: -

Relevant External Links for RNF216P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNF216P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF216P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNF216P1 Gene:


SOURCE GeneReport for Unigene cluster for RNF216P1 Gene:

genes like me logo Genes that share expression patterns with RNF216P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF216P1 Gene

Orthologs for RNF216P1 Gene

Evolution for RNF216P1 Gene

Gene Tree for RNF216P1 (if available)
Gene Tree for RNF216P1 (if available)

No data available for Orthologs for RNF216P1 Gene

Paralogs for RNF216P1 Gene

(1) SIMAP similar genes for RNF216P1 Gene using alignment to 1 proteins:

  • R216L_HUMAN
genes like me logo Genes that share paralogs with RNF216P1: view

No data available for Paralogs for RNF216P1 Gene

Variants for RNF216P1 Gene

Sequence variations from dbSNP and Humsavar for RNF216P1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000017686 -- 4,987,907(+) C/T intron_variant
rs1000114252 -- 4,996,104(+) A/T intron_variant
rs1000137714 -- 4,993,830(+) G/A intron_variant
rs1000137994 -- 4,985,601(+) G/A intron_variant
rs1000168685 -- 4,993,997(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF216P1 Gene

Variant ID Type Subtype PubMed ID
dgv3482n106 OTHER inversion 24896259
dgv6238n100 CNV loss 25217958
esv3611961 CNV loss 21293372
esv3611962 CNV loss 21293372
nsv1019120 CNV loss 25217958
nsv525289 CNV loss 19592680
nsv8033 CNV loss 18304495
nsv966749 CNV duplication 23825009
nsv981425 CNV duplication 23825009

Additional Variant Information for RNF216P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF216P1 Gene

Disorders for RNF216P1 Gene

Additional Disease Information for RNF216P1

No disorders were found for RNF216P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF216P1 Gene

Publications for RNF216P1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  5. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 58

Products for RNF216P1 Gene

Sources for RNF216P1 Gene

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