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Aliases for RNF216-IT1 Gene

Subcategory (RNA class) for RNF216-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNF216-IT1 Gene

  • RNF216 Intronic Transcript 1 2 3 5
  • RNF216 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RNF216-IT1 Gene

Previous GeneCards Identifiers for RNF216-IT1 Gene

  • GC00U933839
  • GC07M005703

Summaries for RNF216-IT1 Gene

GeneCards Summary for RNF216-IT1 Gene

RNF216-IT1 (RNF216 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNF216-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF216-IT1 Gene

Genomics for RNF216-IT1 Gene

GeneHancer (GH) Regulatory Elements for RNF216-IT1 Gene

Promoters and enhancers for RNF216-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I005676 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.8 813 6.5 RAD21 ZNF143 RCOR1 ETV6 IKZF2 RUNX3 ZNF654 ELF1 REST IKZF1 RNF216-IT1 ACTB FBXL18 FSCN1 MIR589 ZNF815P USP42 RNF216
GH07I005687 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.3 -14265 15 HDGF PKNOX1 FOXA2 SMAD1 SIN3A FEZF1 IRF4 YY1 TCF12 ELK1 USP42 RNF216P1 C7orf26 ACTB ZNF316 RBAK FBXL18 MIR589 FSCN1 ENSG00000188365
GH07I005683 Enhancer 0.7 Ensembl dbSUPER 0.8 -2.8 -2840 0.6 ZNF316 BACH1 MAFG NFE2 EMSY NFE2L2 ACTB RNF216-IT1 MIR6874 RNF216
GH07I005669 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.0 8976 4.2 RXRA HLF CEBPB MAX NR2F2 ZFHX2 ZNF316 POLR2A IKZF1 CEBPA RNF216 ZNF890P USP42 TNRC18 FBXL18 EIF2AK1 WIPI2 RNF216-IT1 FSCN1
GH07I005591 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +85.0 85008 8.6 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 FSCN1 C7orf26 AP5Z1 USP42 TNRC18 ANKRD61 CCZ1 RNF216P1 RBAK RNF216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF216-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF216-IT1 Gene

Genomic Locations for RNF216-IT1 Gene
chr7:5,662,432-5,680,461
(GRCh38/hg38)
Size:
18,030 bases
Orientation:
Minus strand
chr7:5,702,063-5,720,092
(GRCh37/hg19)

Genomic View for RNF216-IT1 Gene

Genes around RNF216-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF216-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF216-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF216-IT1 Gene

Proteins for RNF216-IT1 Gene

Post-translational modifications for RNF216-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF216-IT1 Gene

Domains & Families for RNF216-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF216-IT1 Gene

Function for RNF216-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF216-IT1 Gene

Localization for RNF216-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF216-IT1 Gene

Pathways & Interactions for RNF216-IT1 Gene

SuperPathways for RNF216-IT1 Gene

No Data Available

Interacting Proteins for RNF216-IT1 Gene

Gene Ontology (GO) - Biological Process for RNF216-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF216-IT1 Gene

Drugs & Compounds for RNF216-IT1 Gene

No Compound Related Data Available

Transcripts for RNF216-IT1 Gene

mRNA/cDNA for RNF216-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNF216-IT1 Gene

RNF216 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF216-IT1 Gene

No ASD Table

Relevant External Links for RNF216-IT1 Gene

GeneLoc Exon Structure for
RNF216-IT1
ECgene alternative splicing isoforms for
RNF216-IT1

Expression for RNF216-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF216-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF216-IT1 Gene

This gene is overexpressed in Esophagus - Muscularis (x6.2), Colon - Sigmoid (x4.6), and Esophagus - Gastroesophageal Junction (x4.3).

SOURCE GeneReport for Unigene cluster for RNF216-IT1 Gene:

Hs.665728
genes like me logo Genes that share expression patterns with RNF216-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF216-IT1 Gene

Orthologs for RNF216-IT1 Gene

Evolution for RNF216-IT1 Gene

ENSEMBL:
Gene Tree for RNF216-IT1 (if available)
TreeFam:
Gene Tree for RNF216-IT1 (if available)

No data available for Orthologs for RNF216-IT1 Gene

Paralogs for RNF216-IT1 Gene

No data available for Paralogs for RNF216-IT1 Gene

Variants for RNF216-IT1 Gene

Sequence variations from dbSNP and Humsavar for RNF216-IT1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000054029 -- 5,665,680(-) G/A intron_variant
rs1000158022 -- 5,666,027(-) G/A intron_variant
rs1000196310 -- 5,670,693(-) T/A intron_variant
rs1000205994 -- 5,677,598(-) T/C intron_variant
rs1000252126 -- 5,669,434(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF216-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3482n106 OTHER inversion 24896259
esv3891028 CNV gain 25118596
nsv1028652 CNV loss 25217958
nsv436904 CNV insertion 17901297
nsv830890 CNV loss 17160897

Additional Variant Information for RNF216-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF216-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF216-IT1 Gene

Disorders for RNF216-IT1 Gene

Additional Disease Information for RNF216-IT1

No disorders were found for RNF216-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF216-IT1 Gene

Publications for RNF216-IT1 Gene

No publications were found for RNF216-IT1 Gene.

Products for RNF216-IT1 Gene

Sources for RNF216-IT1 Gene

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