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Aliases for RNF175 Gene

Aliases for RNF175 Gene

  • Ring Finger Protein 175 2 3 5

External Ids for RNF175 Gene

Previous GeneCards Identifiers for RNF175 Gene

  • GC04M154989
  • GC04M154850
  • GC04M154631
  • GC04M150362

Summaries for RNF175 Gene

GeneCards Summary for RNF175 Gene

RNF175 (Ring Finger Protein 175) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include ubiquitin protein ligase activity. An important paralog of this gene is RNF121.

Additional gene information for RNF175 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF175 Gene

Genomics for RNF175 Gene

GeneHancer (GH) Regulatory Elements for RNF175 Gene

Promoters and enhancers for RNF175 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I153759 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 550.8 +0.4 381 0.8 L3MBTL2 POLR2A ZNF143 CTBP2 EZH2 RNF175 GC04M153689
GH04I153760 Enhancer 0.4 ENCODE 550.8 +0.9 931 0.2 CTBP2 EZH2 RNF175 GC04M153689
GH04I153218 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 9.2 +538.8 538825 6.4 FOXA2 SIN3A FEZF1 DMAP1 GLI4 ZNF2 ZNF48 YY1 GLIS2 ZNF213 TRIM2 ARFIP1 MIR4453HG RNU6-1196P ENSG00000201786 TIGD4 MND1 RNF175 LOC105377496 GC04M153170
GH04I153660 Enhancer 1.1 Ensembl ENCODE dbSUPER 15.5 +99.0 99034 2.4 FOXA2 MAX CEBPG RAD21 YY1 POLR2A RXRA CEBPB EP300 GABPA RNF175 TLR2 LOC100419170 WDR45P1
GH04I153683 Enhancer 1 Ensembl ENCODE dbSUPER 15.9 +75.2 75234 3.2 CTCF ZNF687 USF1 L3MBTL2 BHLHE40 MAX USF2 ELF1 CBX8 POLR2A TLR2 RNF175 LOC105377499
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNF175 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNF175 gene promoter:

Genomic Locations for RNF175 Gene

Genomic Locations for RNF175 Gene
chr4:153,707,672-153,760,235
(GRCh38/hg38)
Size:
52,564 bases
Orientation:
Minus strand
chr4:154,631,277-154,681,387
(GRCh37/hg19)

Genomic View for RNF175 Gene

Genes around RNF175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF175 Gene

Proteins for RNF175 Gene

  • Protein details for RNF175 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4F7-RN175_HUMAN
    Recommended name:
    RING finger protein 175
    Protein Accession:
    Q8N4F7
    Secondary Accessions:
    • C9JL66
    • Q8NB61

    Protein attributes for RNF175 Gene

    Size:
    328 amino acids
    Molecular mass:
    38266 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RNF175 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RNF175 Gene

Post-translational modifications for RNF175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF175 Gene

Domains & Families for RNF175 Gene

Gene Families for RNF175 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for RNF175 Gene

Suggested Antigen Peptide Sequences for RNF175 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF175: view

No data available for UniProtKB/Swiss-Prot for RNF175 Gene

Function for RNF175 Gene

Phenotypes From GWAS Catalog for RNF175 Gene

Gene Ontology (GO) - Molecular Function for RNF175 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
GO:0061630 ubiquitin protein ligase activity IBA --
genes like me logo Genes that share ontologies with RNF175: view

Phenotypes for RNF175 Gene

genes like me logo Genes that share phenotypes with RNF175: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF175 Gene

Localization for RNF175 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RNF175 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RNF175 gene
Compartment Confidence
plasma membrane 3
endoplasmic reticulum 3
golgi apparatus 3
peroxisome 2

Gene Ontology (GO) - Cellular Components for RNF175 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IBA --
GO:0005789 endoplasmic reticulum membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RNF175: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RNF175 Gene

Pathways & Interactions for RNF175 Gene

SuperPathways for RNF175 Gene

No Data Available

Interacting Proteins for RNF175 Gene

Gene Ontology (GO) - Biological Process for RNF175 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
GO:0030433 ubiquitin-dependent ERAD pathway IBA --
GO:0030968 endoplasmic reticulum unfolded protein response IBA --
genes like me logo Genes that share ontologies with RNF175: view

No data available for Pathways by source and SIGNOR curated interactions for RNF175 Gene

Drugs & Compounds for RNF175 Gene

No Compound Related Data Available

Transcripts for RNF175 Gene

Unigene Clusters for RNF175 Gene

Ring finger protein 175:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF175 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10
SP1: - - - -
SP2: - - -
SP3: - - - -
SP4:
SP5: -
SP6: - - - - -
SP7: -

Relevant External Links for RNF175 Gene

GeneLoc Exon Structure for
RNF175
ECgene alternative splicing isoforms for
RNF175

Expression for RNF175 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF175 Gene

mRNA differential expression in normal tissues according to GTEx for RNF175 Gene

This gene is overexpressed in Whole Blood (x5.7), Brain - Frontal Cortex (BA9) (x4.8), Brain - Cortex (x4.4), and Brain - Anterior cingulate cortex (BA24) (x4.2).

Protein differential expression in normal tissues from HIPED for RNF175 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RNF175 Gene



Protein tissue co-expression partners for RNF175 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RNF175 Gene:

RNF175

SOURCE GeneReport for Unigene cluster for RNF175 Gene:

Hs.388364

Evidence on tissue expression from TISSUES for RNF175 Gene

  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with RNF175: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF175 Gene

Orthologs for RNF175 Gene

This gene was present in the common ancestor of animals.

Orthologs for RNF175 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNF175 33 34
  • 99.7 (n)
dog
(Canis familiaris)
Mammalia RNF175 33 34
  • 90.15 (n)
cow
(Bos Taurus)
Mammalia RNF175 33 34
  • 89.44 (n)
zebrafish
(Danio rerio)
Actinopterygii rnf175 33 34
  • 72.13 (n)
zgc56665 33
fruit fly
(Drosophila melanogaster)
Insecta CG15814 34
  • 55 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rnf-121 34
  • 37 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 60 (a)
OneToMany
Species where no ortholog for RNF175 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNF175 Gene

ENSEMBL:
Gene Tree for RNF175 (if available)
TreeFam:
Gene Tree for RNF175 (if available)

Paralogs for RNF175 Gene

Paralogs for RNF175 Gene

(1) SIMAP similar genes for RNF175 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for RNF175 Gene

genes like me logo Genes that share paralogs with RNF175: view

Variants for RNF175 Gene

Sequence variations from dbSNP and Humsavar for RNF175 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs10000608 -- 153,716,933(-) C/T intron_variant
rs1000086817 -- 153,726,481(-) T/C intron_variant
rs1000137409 -- 153,752,081(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000269083 -- 153,723,712(-) T/A intron_variant
rs1000318908 -- 153,737,684(-) C/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF175 Gene

Variant ID Type Subtype PubMed ID
nsv595749 CNV gain 21841781
nsv10589 CNV gain 18304495
nsv1022081 CNV gain 25217958
esv3602731 CNV loss 21293372
esv2728558 CNV deletion 23290073
esv2728557 CNV deletion 23290073
esv2728556 CNV deletion 23290073
esv2728555 CNV deletion 23290073

Variation tolerance for RNF175 Gene

Residual Variation Intolerance Score: 91.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.57; 91.22% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RNF175 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF175

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF175 Gene

Disorders for RNF175 Gene

Additional Disease Information for RNF175

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RNF175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF175 Gene

Publications for RNF175 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  2. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 44 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58

Products for RNF175 Gene

Sources for RNF175 Gene

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