Aliases for RNF157-AS1 Gene

Subcategory (RNA class) for RNF157-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for RNF157-AS1 Gene

  • RNF157 Antisense RNA 1 2 3 5
  • RNF157 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0118810 169
  • NONHSAG022806 94
  • Lnc-ZACN-65 170
  • Lnc-ZACN-64 170
  • RNF157-AS1 2

External Ids for RNF157-AS1 Gene

Previous GeneCards Identifiers for RNF157-AS1 Gene

  • GC17P074138

Summaries for RNF157-AS1 Gene

GeneCards Summary for RNF157-AS1 Gene

RNF157-AS1 (RNF157 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RNF157-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNF157-AS1 Gene

Genomics for RNF157-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNF157-AS1 Gene

Promoters and enhancers for RNF157-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076138 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 759.1 +0.3 261 1.3 RBPJ NR2F6 MIXL1 NFYC HDGF RERE ELF3 POLR2A CEBPG TFE3 RNF157-AS1 piR-45710 SNHG20 ENSG00000261335 FOXJ1 PRPSAP1 ZACN RECQL5
GH17J076136 Enhancer 0.4 ENCODE 750.6 -1.7 -1677 0 ZNF121 PATZ1 CTCF KLF1 RNF157-AS1 piR-45710 FOXJ1 LOC101928447
GH17J076142 Enhancer 0.4 ENCODE 750.6 -1.6 -1567 0 PATZ1 CTCF POLR2A RNF157-AS1 piR-45710 FOXJ1 LOC101928447
GH17J076137 Enhancer 0.3 ENCODE 750.6 -0.5 -471 0.1 EZH2 ZBTB33 RNF157-AS1 piR-45710 FOXJ1 LOC101928447
GH17J076140 Enhancer 0.3 ENCODE 750.6 +1.0 1003 0.2 EZH2 FOXJ1 RNF157-AS1 piR-45710
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF157-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF157-AS1 Gene

Genomic Locations for RNF157-AS1 Gene
chr17:76,138,432-76,154,650
(GRCh38/hg38)
Size:
16,219 bases
Orientation:
Plus strand
chr17:74,136,637-74,150,731
(GRCh37/hg19)
Size:
14,095 bases
Orientation:
Plus strand

Genomic View for RNF157-AS1 Gene

Genes around RNF157-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF157-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF157-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF157-AS1 Gene

Proteins for RNF157-AS1 Gene

Post-translational modifications for RNF157-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF157-AS1 Gene

Domains & Families for RNF157-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNF157-AS1 Gene

Function for RNF157-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF157-AS1 Gene

Localization for RNF157-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF157-AS1 Gene

Pathways & Interactions for RNF157-AS1 Gene

PathCards logo

SuperPathways for RNF157-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF157-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF157-AS1 Gene

Drugs & Compounds for RNF157-AS1 Gene

No Compound Related Data Available

Transcripts for RNF157-AS1 Gene

mRNA/cDNA for RNF157-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) NONCODE transcripts :
(7) RNACentral transcripts :
(6) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF157-AS1 Gene

No ASD Table

Relevant External Links for RNF157-AS1 Gene

GeneLoc Exon Structure for
RNF157-AS1
ECgene alternative splicing isoforms for
RNF157-AS1

Expression for RNF157-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF157-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF157-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.7) and Brain - Frontal Cortex (BA9) (x4.1).

SOURCE GeneReport for Unigene cluster for RNF157-AS1 Gene:

Hs.654866
genes like me logo Genes that share expression patterns with RNF157-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF157-AS1 Gene

Orthologs for RNF157-AS1 Gene

Evolution for RNF157-AS1 Gene

ENSEMBL:
Gene Tree for RNF157-AS1 (if available)
TreeFam:
Gene Tree for RNF157-AS1 (if available)

No data available for Orthologs for RNF157-AS1 Gene

Paralogs for RNF157-AS1 Gene

No data available for Paralogs for RNF157-AS1 Gene

Variants for RNF157-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF157-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000050774 -- 76,144,509(+) G/A intron_variant
rs1000144384 -- 76,150,352(+) T/C intron_variant
rs1000207778 -- 76,149,903(+) G/A intron_variant
rs1000318899 -- 76,144,598(+) C/T intron_variant
rs1000464184 -- 76,154,719(+) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF157-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2144 CNV insertion 18451855
nsv833546 CNV loss 17160897

Additional Variant Information for RNF157-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF157-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF157-AS1 Gene

Disorders for RNF157-AS1 Gene

Additional Disease Information for RNF157-AS1

No disorders were found for RNF157-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF157-AS1 Gene

Publications for RNF157-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for RNF157-AS1 Gene

Sources for RNF157-AS1 Gene