Aliases for RNF157-AS1 Gene

Subcategory (RNA class) for RNF157-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RNF157-AS1 Gene

  • RNF157 Antisense RNA 1 2 3 5
  • RNF157 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RNF157-AS1 2 5
  • NONHSAG022806.2 91
  • HSALNG0118810 164
  • Lnc-ZACN-65 165
  • Lnc-ZACN-64 165

External Ids for RNF157-AS1 Gene

Previous GeneCards Identifiers for RNF157-AS1 Gene

  • GC17P074138

Summaries for RNF157-AS1 Gene

GeneCards Summary for RNF157-AS1 Gene

RNF157-AS1 (RNF157 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RNF157-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNF157-AS1 Gene

Genomics for RNF157-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNF157-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076138 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 609.1 +0.3 261 1.3 HNRNPL GATAD2A TFE3 NFKBIZ ZIC2 RBFOX2 RXRB PATZ1 IRF2 EZH2 RNF157-AS1 piR-45710 FOXJ1 PRPSAP1 ZACN RECQL5 EXOC7
GH17J076136 Enhancer 0.5 ENCODE 600.7 -1.7 -1677 0 PATZ1 CTCF KLF1 ZNF121 EZH2 RNF157-AS1 piR-45710 FOXJ1 LOC101928447 EXOC7
GH17J076142 Enhancer 0.4 ENCODE 600.7 -1.6 -1567 0 PATZ1 CTCF POLR2A EZH2 RNF157-AS1 piR-45710 FOXJ1 LOC101928447 EXOC7
GH17J076137 Enhancer 0.3 ENCODE 600.7 -0.5 -471 0.1 EZH2 ZBTB33 RNF157-AS1 piR-45710 FOXJ1 LOC101928447 EXOC7
GH17J076140 Enhancer 0.3 ENCODE 600.7 +1.0 1003 0.2 EZH2 FOXJ1 RNF157-AS1 piR-45710 EXOC7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF157-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNF157-AS1 Gene

Genomic Locations for RNF157-AS1 Gene
chr17:76,138,432-76,154,650
(GRCh38/hg38)
Size:
16,219 bases
Orientation:
Plus strand
chr17:74,136,637-74,150,731
(GRCh37/hg19)
Size:
14,095 bases
Orientation:
Plus strand

Genomic View for RNF157-AS1 Gene

Genes around RNF157-AS1 on UCSC Golden Path with GeneCards custom track
RNF157-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RNF157-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF157-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF157-AS1 Gene

Proteins for RNF157-AS1 Gene

Post-translational modifications for RNF157-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF157-AS1 Gene

Domains & Families for RNF157-AS1 Gene

Gene Families for RNF157-AS1 Gene

genes like me logo Genes that share domains with RNF157-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNF157-AS1 Gene

Function for RNF157-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF157-AS1 Gene

Localization for RNF157-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF157-AS1 Gene

Pathways & Interactions for RNF157-AS1 Gene

PathCards logo

SuperPathways for RNF157-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF157-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNF157-AS1 Gene

Drugs & Compounds for RNF157-AS1 Gene

No Compound Related Data Available

Transcripts for RNF157-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RNF157-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B72C_9606 lncRNA 2177 4

HGNC: 44127,

RefSeq: NR_040017,

LncBook: HSALNT0245364,

NONCODE: NONHSAT055986.2,

URS000024C024_9606 lncRNA 864 4

Ensembl: ENST00000586627 (view in UCSC) ,

LncBook: HSALNT0245367,

LNCipedia: lnc-ZACN-64:2,

NONCODE: NONHSAT055988.2,

URS0000061CFD_9606 lncRNA 536 4

Ensembl: ENST00000586661 (view in UCSC) ,

LncBook: HSALNT0245371,

LNCipedia: lnc-ZACN-65:1,

NONCODE: NONHSAT055993.2,

URS00001AD8F8_9606 lncRNA 451 4

Ensembl: ENST00000585542 (view in UCSC) ,

LncBook: HSALNT0245366,

LNCipedia: lnc-ZACN-64:1,

NONCODE: NONHSAT055987.2,

URS00003404B8_9606 lncRNA 421 4

Ensembl: ENST00000592748 (view in UCSC) ,

LncBook: HSALNT0245373,

LNCipedia: lnc-ZACN-65:2,

NONCODE: NONHSAT055994.2,

RNF157-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RNF157-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RNF157-AS1 Gene

No ASD Table

Relevant External Links for RNF157-AS1 Gene

GeneLoc Exon Structure for
RNF157-AS1

Expression for RNF157-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNF157-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF157-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.7) and Brain - Frontal Cortex (BA9) (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RNF157-AS1

SOURCE GeneReport for Unigene cluster for RNF157-AS1 Gene:

Hs.654866
genes like me logo Genes that share expression patterns with RNF157-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF157-AS1 Gene

Orthologs for RNF157-AS1 Gene

Evolution for RNF157-AS1 Gene

ENSEMBL:
Gene Tree for RNF157-AS1 (if available)
TreeFam:
Gene Tree for RNF157-AS1 (if available)

No data available for Orthologs for RNF157-AS1 Gene

Paralogs for RNF157-AS1 Gene

No data available for Paralogs for RNF157-AS1 Gene

Variants for RNF157-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RNF157-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
790187 Benign: not provided 76,152,455(+) C/A SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for RNF157-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RNF157-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2144 CNV insertion 18451855
nsv833546 CNV loss 17160897

Additional Variant Information for RNF157-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF157-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF157-AS1 Gene

Disorders for RNF157-AS1 Gene

No disorders were found for RNF157-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF157-AS1 Gene

Publications for RNF157-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for RNF157-AS1 Gene

Sources for RNF157-AS1 Gene