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Aliases for RNF144A-AS1 Gene

Subcategory (RNA class) for RNF144A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RNF144A-AS1 Gene

  • RNF144A Antisense RNA 1 2 3 5
  • RNF144A Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for RNF144A-AS1 Gene

Previous GeneCards Identifiers for RNF144A-AS1 Gene

  • GC02M007054

Summaries for RNF144A-AS1 Gene

GeneCards Summary for RNF144A-AS1 Gene

RNF144A-AS1 (RNF144A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNF144A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF144A-AS1 Gene

Genomics for RNF144A-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNF144A-AS1 Gene

Promoters and enhancers for RNF144A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J006916 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.9 893 2 FOXA2 FUS RB1 ZFP64 SIN3A RARA ZNF335 ZNF766 CREM SMARCA5 RNF144A RNF144A-AS1 ENSG00000271947
GH02J006919 Enhancer 0.9 ENCODE dbSUPER 650.7 -0.5 -496 0.2 SOX13 SAP130 ARID4B EBF1 ZIC2 RBPJ RARA NR2F6 HOMEZ SP5 RNF144A RNF144A-AS1 CMPK2 GC02M007018
GH02J006964 Enhancer 0.6 dbSUPER 26.9 -51.2 -51218 10 CTCF JUND FOXA2 HLF ZMYM3 ZBTB33 MAFK RAD21 RNF144A-AS1 RNF144A GC02M007018
GH02J007007 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.3 -91.5 -91463 6.3 PKNOX1 ATF1 ARNT ZNF766 CBX5 GATA2 E2F8 FOS ATF7 RUNX3 RNF144A RNF144A-AS1 GC02M007018
GH02J006879 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.5 +37.7 37717 2.6 PKNOX1 ATF1 ARNT NCOA2 ZNF280A TCF12 ZNF766 CBX5 GATA2 ATF7 RNF144A RNF144A-AS1 CMPK2 RSAD2 GC02P006897
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF144A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF144A-AS1 Gene

Genomic Locations for RNF144A-AS1 Gene
6,434 bases
Minus strand
6,434 bases
Minus strand

Genomic View for RNF144A-AS1 Gene

Genes around RNF144A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF144A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF144A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF144A-AS1 Gene

Proteins for RNF144A-AS1 Gene

Post-translational modifications for RNF144A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF144A-AS1 Gene

Domains & Families for RNF144A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF144A-AS1 Gene

Function for RNF144A-AS1 Gene

Phenotypes From GWAS Catalog for RNF144A-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF144A-AS1 Gene

Localization for RNF144A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF144A-AS1 Gene

Pathways & Interactions for RNF144A-AS1 Gene

SuperPathways for RNF144A-AS1 Gene

No Data Available

Interacting Proteins for RNF144A-AS1 Gene

Gene Ontology (GO) - Biological Process for RNF144A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNF144A-AS1 Gene

Drugs & Compounds for RNF144A-AS1 Gene

No Compound Related Data Available

Transcripts for RNF144A-AS1 Gene

mRNA/cDNA for RNF144A-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for RNF144A-AS1 Gene

RNF144A antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF144A-AS1 Gene

No ASD Table

Relevant External Links for RNF144A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNF144A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF144A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF144A-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Putamen (basal ganglia) (x4.4), Pancreas (x4.2), Brain - Caudate (basal ganglia) (x4.0), and Brain - Cortex (x4.0).

SOURCE GeneReport for Unigene cluster for RNF144A-AS1 Gene:

genes like me logo Genes that share expression patterns with RNF144A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF144A-AS1 Gene

Orthologs for RNF144A-AS1 Gene

Evolution for RNF144A-AS1 Gene

Gene Tree for RNF144A-AS1 (if available)
Gene Tree for RNF144A-AS1 (if available)

No data available for Orthologs for RNF144A-AS1 Gene

Paralogs for RNF144A-AS1 Gene

No data available for Paralogs for RNF144A-AS1 Gene

Variants for RNF144A-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNF144A-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001307245 -- 6,917,626(-) G/A intron_variant
rs1001806723 -- 6,917,946(-) T/ intron_variant
rs1002281312 -- 6,918,117(-) C/T intron_variant
rs1002303012 -- 6,918,175(-) C/T intron_variant
rs1003155780 -- 6,913,747(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF144A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv24593 CNV loss 19812545
nsv1118850 CNV deletion 24896259
nsv580912 CNV loss 21841781
nsv580913 CNV gain 21841781
nsv833326 CNV loss 17160897

Additional Variant Information for RNF144A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF144A-AS1 Gene

Disorders for RNF144A-AS1 Gene

Additional Disease Information for RNF144A-AS1

No disorders were found for RNF144A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF144A-AS1 Gene

Publications for RNF144A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for RNF144A-AS1 Gene

Sources for RNF144A-AS1 Gene

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