Aliases for RNF126P1 Gene

Aliases for RNF126P1 Gene

  • Ring Finger Protein 126 Pseudogene 1 2 3 5

External Ids for RNF126P1 Gene

Previous GeneCards Identifiers for RNF126P1 Gene

  • GC17P055595
  • GC17P052473
  • GC17P055122
  • GC17P050483

Summaries for RNF126P1 Gene

GeneCards Summary for RNF126P1 Gene

RNF126P1 (Ring Finger Protein 126 Pseudogene 1) is a Pseudogene.

Additional gene information for RNF126P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNF126P1 Gene

Genomics for RNF126P1 Gene

GeneHancer (GH) Regulatory Elements for RNF126P1 Gene

Promoters and enhancers for RNF126P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J057045 Promoter/Enhancer 0.8 Ensembl ENCODE 769.5 +0.8 823 2.2 RELA SCRT2 RUNX3 POLR2A EBF1 MAX RNF126P1 piR-58729 piR-46556 AKAP1 SCPEP1 lnc-COIL-1 piR-47851-001
GH17J057053 Enhancer 1 Ensembl ENCODE 10.5 +8.9 8947 1.2 CTCF SMARCE1 RAD21 TEAD4 SP1 CBFA2T2 SMARCA4 CDC5L IKZF1 DPF2 AKAP1 DGKE SRSF1 RNF126P1 lnc-COIL-1 ENSG00000263004
GH17J057051 Enhancer 0.7 Ensembl ENCODE 11.8 +6.6 6582 1.5 SREBF1 ZNF362 NFIB ZNF384 ZNF629 CREB1 ZNF366 ATF2 L3MBTL2 lnc-COIL-1 RNF126P1 AKAP1 ENSG00000263004
GH17J057547 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 5.2 +507.7 507728 11.2 E2F8 ZBTB40 ZBTB6 SMARCE1 CTBP1 NR2F6 L3MBTL2 DACH1 TEAD4 ZKSCAN8 ENSG00000262298 SRSF1 SCPEP1 RNF126P1 DYNLL2 MSI2 lnc-AKAP1-7 RF00017-2456
GH17J056749 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.8 -292.0 -292023 7.7 NFIB PRDM1 ZNF384 ZIC2 SP1 FOXA2 FOS ZNF623 BCOR NFIC NOG RNF126P1 piR-36588-190 HSALNG0117577
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF126P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNF126P1 gene promoter:
  • Arnt
  • c-Myb
  • E47
  • Elk-1
  • En-1
  • MyoD
  • MZF-1
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for RNF126P1 Gene

Genomic Locations for RNF126P1 Gene
chr17:57,045,478-57,046,797
(GRCh38/hg38)
Size:
1,320 bases
Orientation:
Plus strand
chr17:55,122,839-55,124,158
(GRCh37/hg19)
Size:
1,320 bases
Orientation:
Plus strand

Genomic View for RNF126P1 Gene

Genes around RNF126P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF126P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF126P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF126P1 Gene

Proteins for RNF126P1 Gene

Post-translational modifications for RNF126P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNF126P1 Gene

Domains & Families for RNF126P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNF126P1 Gene

Function for RNF126P1 Gene

Phenotypes From GWAS Catalog for RNF126P1 Gene

genes like me logo Genes that share phenotypes with RNF126P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNF126P1 Gene

Localization for RNF126P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF126P1 Gene

Pathways & Interactions for RNF126P1 Gene

PathCards logo

SuperPathways for RNF126P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNF126P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNF126P1 Gene

Drugs & Compounds for RNF126P1 Gene

No Compound Related Data Available

Transcripts for RNF126P1 Gene

mRNA/cDNA for RNF126P1 Gene

(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF126P1 Gene

No ASD Table

Relevant External Links for RNF126P1 Gene

GeneLoc Exon Structure for
RNF126P1
ECgene alternative splicing isoforms for
RNF126P1

Expression for RNF126P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF126P1 Gene

mRNA differential expression in normal tissues according to GTEx for RNF126P1 Gene

This gene is overexpressed in Testis (x34.6).

NURSA nuclear receptor signaling pathways regulating expression of RNF126P1 Gene:

RNF126P1

SOURCE GeneReport for Unigene cluster for RNF126P1 Gene:

Hs.132299
genes like me logo Genes that share expression patterns with RNF126P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF126P1 Gene

Orthologs for RNF126P1 Gene

Evolution for RNF126P1 Gene

ENSEMBL:
Gene Tree for RNF126P1 (if available)
TreeFam:
Gene Tree for RNF126P1 (if available)

No data available for Orthologs for RNF126P1 Gene

Paralogs for RNF126P1 Gene

No data available for Paralogs for RNF126P1 Gene

Variants for RNF126P1 Gene

Sequence variations from dbSNP and Humsavar for RNF126P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000902927 -- 57,045,672(+) C/A/T non_coding_transcript_variant
rs1002697449 -- 57,044,343(+) T/A/G upstream_transcript_variant
rs1004082188 -- 57,044,949(+) G/A/C/T upstream_transcript_variant
rs1004328098 -- 57,044,797(+) C/T upstream_transcript_variant
rs1005962876 -- 57,044,956(+) T/TT upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF126P1 Gene

Variant ID Type Subtype PubMed ID
esv33941 CNV loss 17666407
nsv2105 CNV deletion 18451855

Additional Variant Information for RNF126P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNF126P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNF126P1 Gene

Disorders for RNF126P1 Gene

Additional Disease Information for RNF126P1

No disorders were found for RNF126P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF126P1 Gene

Publications for RNF126P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56

Products for RNF126P1 Gene

Sources for RNF126P1 Gene