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Aliases for RNF103-CHMP3 Gene

Aliases for RNF103-CHMP3 Gene

  • RNF103-CHMP3 Readthrough 2 3 5
  • RNF103-VPS24 Readthrough 2 3
  • RNF103-CHMP3 Read-Through 3
  • RNF103-CHMP3 Protein 3
  • RNF103-VPS24 3

External Ids for RNF103-CHMP3 Gene

Previous HGNC Symbols for RNF103-CHMP3 Gene

  • RNF103-VPS24

Previous GeneCards Identifiers for RNF103-CHMP3 Gene

  • GC02M086738

Summaries for RNF103-CHMP3 Gene

Entrez Gene Summary for RNF103-CHMP3 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring RNF103 (ring finger protein 103) and CHMP3 (charged multivesicular body protein 3) genes. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Oct 2011]

GeneCards Summary for RNF103-CHMP3 Gene

RNF103-CHMP3 (RNF103-CHMP3 Readthrough) is a Protein Coding gene. Among its related pathways are Internalization of ErbB1 and Endocytosis. An important paralog of this gene is CHMP3.

Additional gene information for RNF103-CHMP3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNF103-CHMP3 Gene

Genomics for RNF103-CHMP3 Gene

GeneHancer (GH) Regulatory Elements for RNF103-CHMP3 Gene

Promoters and enhancers for RNF103-CHMP3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J086719 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.5 484 2.5 PKNOX1 ATF1 FOXA2 ARNT SIN3A POLR2B GLIS2 ZNF207 ATF7 SP3 RMND5A RNF103-CHMP3 CD8A ENSG00000231259 GC02M086689
GH02J086694 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +25.7 25727 1.5 FOXA2 GLI4 ETS1 TCF12 ZNF280A FOS ATF7 SP3 NFYC NCOA1 SNORD94 LOC102724642 RNF103-CHMP3 RNF103 POLR1A CHMP3 RNU6-640P RMND5A CD8A ENSG00000231259
GH02J086583 Enhancer 1 Ensembl ENCODE 11.8 +136.8 136767 1.2 HDAC1 PKNOX1 ATF1 TCF12 ZBTB11 CEBPB ZEB2 ELF1 NR2F2 MEF2D GC02M086575 RNF103 RNF103-CHMP3 CHMP3 LOC105374845
GH02J086671 Enhancer 0.7 ENCODE 11.9 +49.3 49349 0.2 SOX13 ATF1 FOXA2 ZBTB21 JUN MAX FOSL1 GATA3 ATF7 GATAD2A RNF103 RNF103-CHMP3 CHMP3 RNU6-640P GC02P086686
GH02J086747 Enhancer 0.7 ENCODE 11.9 -27.1 -27053 1.5 CEBPG BMI1 IRF9 ZNF335 ATF7 TRIM24 RFX1 SOX6 ZNF740 HLF RNF103-CHMP3 RNF103 CHMP3 RNU6-640P CD8A RMND5A IMMT GC02M086689 LOC105374846
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNF103-CHMP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNF103-CHMP3 Gene

Genomic Locations for RNF103-CHMP3 Gene
217,693 bases
Minus strand
217,693 bases
Minus strand

Genomic View for RNF103-CHMP3 Gene

Genes around RNF103-CHMP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNF103-CHMP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNF103-CHMP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNF103-CHMP3 Gene

Proteins for RNF103-CHMP3 Gene

  • Protein details for RNF103-CHMP3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    RNF103-CHMP3 readthrough
    Protein Accession:

    Protein attributes for RNF103-CHMP3 Gene

    221 amino acids
    Molecular mass:
    25416 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RNF103-CHMP3 Gene

Post-translational modifications for RNF103-CHMP3 Gene

No Post-translational modifications

Other Protein References for RNF103-CHMP3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RNF103-CHMP3 Gene

Domains & Families for RNF103-CHMP3 Gene

Gene Families for RNF103-CHMP3 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RNF103-CHMP3 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNF103-CHMP3: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNF103-CHMP3 Gene

Function for RNF103-CHMP3 Gene

Phenotypes From GWAS Catalog for RNF103-CHMP3 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RNF103-CHMP3

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNF103-CHMP3 Gene

Localization for RNF103-CHMP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNF103-CHMP3 Gene

Pathways & Interactions for RNF103-CHMP3 Gene

genes like me logo Genes that share pathways with RNF103-CHMP3: view

Pathways by source for RNF103-CHMP3 Gene

1 BioSystems pathway for RNF103-CHMP3 Gene
2 KEGG pathways for RNF103-CHMP3 Gene

Gene Ontology (GO) - Biological Process for RNF103-CHMP3 Gene


No data available for SIGNOR curated interactions for RNF103-CHMP3 Gene

Drugs & Compounds for RNF103-CHMP3 Gene

No Compound Related Data Available

Transcripts for RNF103-CHMP3 Gene

mRNA/cDNA for RNF103-CHMP3 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RNF103-CHMP3

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNF103-CHMP3 Gene

No ASD Table

Relevant External Links for RNF103-CHMP3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNF103-CHMP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNF103-CHMP3 Gene

genes like me logo Genes that share expression patterns with RNF103-CHMP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNF103-CHMP3 Gene

Orthologs for RNF103-CHMP3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RNF103-CHMP3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 34
  • 100 (a)
(Mus musculus)
Mammalia Chmp3 34
  • 90 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 87 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 82 (a)
(Bos Taurus)
Mammalia -- 34
  • 71 (a)
(Canis familiaris)
Mammalia -- 34
  • 70 (a)
(Gallus gallus)
Aves -- 34
  • 87 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 68 (a)
(Danio rerio)
Actinopterygii chmp3 34
  • 79 (a)
fruit fly
(Drosophila melanogaster)
Insecta vps24 34
  • 57 (a)
(Caenorhabditis elegans)
Secernentea vps-24 34
  • 55 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VPS24 34
  • 28 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 52 (a)
Species where no ortholog for RNF103-CHMP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RNF103-CHMP3 Gene

Gene Tree for RNF103-CHMP3 (if available)
Gene Tree for RNF103-CHMP3 (if available)
Evolutionary constrained regions (ECRs) for RNF103-CHMP3: view image

Paralogs for RNF103-CHMP3 Gene

Paralogs for RNF103-CHMP3 Gene

genes like me logo Genes that share paralogs with RNF103-CHMP3: view

Variants for RNF103-CHMP3 Gene

Sequence variations from dbSNP and Humsavar for RNF103-CHMP3 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000045302 -- 86,564,178(-) T/C intron_variant
rs1000065002 -- 86,653,651(-) C/T intron_variant
rs1000079966 -- 86,586,310(-) A/T intron_variant
rs1000087562 -- 86,519,774(-) T/C/G intron_variant
rs1000088220 -- 86,717,893(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNF103-CHMP3 Gene

Variant ID Type Subtype PubMed ID
esv1297314 CNV deletion 17803354
esv1775646 CNV insertion 17803354
esv2625579 CNV deletion 19546169
esv2639295 CNV deletion 19546169
esv2720302 CNV deletion 23290073
esv3591550 CNV loss 21293372
esv3591551 CNV loss 21293372
esv3591552 CNV loss 21293372
esv3591554 CNV loss 21293372
esv3591555 CNV loss 21293372
esv3591556 CNV loss 21293372
nsv10063 CNV gain 18304495
nsv1011590 CNV gain 25217958
nsv1072419 CNV deletion 25765185
nsv1115563 CNV duplication 24896259
nsv2813 CNV insertion 18451855
nsv2814 CNV insertion 18451855
nsv436305 CNV deletion 17901297
nsv818064 CNV loss 17921354
nsv829488 CNV gain 20364138
nsv829489 CNV loss 20364138
nsv955217 CNV duplication 24416366
nsv961802 CNV duplication 23825009

Variation tolerance for RNF103-CHMP3 Gene

Residual Variation Intolerance Score: 31.3% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RNF103-CHMP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RNF103-CHMP3 Gene

Disorders for RNF103-CHMP3 Gene

Additional Disease Information for RNF103-CHMP3

No disorders were found for RNF103-CHMP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNF103-CHMP3 Gene

Publications for RNF103-CHMP3 Gene

  1. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C … Emili A (Nature 2015) 3 58
  2. Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. (PMID: 24159190) Seppälä I … AtheroRemo Consortium (European heart journal 2014) 3 58
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58

Products for RNF103-CHMP3 Gene

Sources for RNF103-CHMP3 Gene

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