Aliases for RND3 Gene
Aliases for RND3 Gene
External Ids for RND3 Gene
- HGNC: 671
- Entrez Gene: 390
- Ensembl: ENSG00000115963
- OMIM: 602924
- UniProtKB: P61587
Previous HGNC Symbols for RND3 Gene
- ARHE
Previous GeneCards Identifiers for RND3 Gene
- GC02M151151
- GC02M151032
- GC02M151324
- GC02M143221
Summaries for RND3 Gene
-
This gene encodes a protein which is a member of the small GTPase protein superfamily. The encoded protein binds only GTP but has no GTPase activity, and appears to act as a negative regulator of cytoskeletal organization leading to loss of adhesion. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Dec 2011]
GeneCards Summary for RND3 Gene
RND3 (Rho Family GTPase 3) is a Protein Coding gene. Among its related pathways are ERK Signaling and Apoptotic Pathways in Synovial Fibroblasts. Gene Ontology (GO) annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RND2.
UniProtKB/Swiss-Prot for RND3 Gene
-
Binds GTP but lacks intrinsic GTPase activity and is resistant to Rho-specific GTPase-activating proteins.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RND3 Gene
Genomics for RND3 Gene
GeneHancer (GH) Regulatory Elements for RND3 Gene
Promoters and enhancers for RND3 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J150469 | Promoter/Enhancer | 2.4 | EPDnew Ensembl ENCODE dbSUPER | 650.2 | +60.0 | 59963 | 18.6 | FOXA2 ZFP64 SIN3A ZNF2 YY1 ZNF143 FOS DEK SP3 REST | RND3 LOC105373685 | |
| GH02J150538 | Promoter/Enhancer | 1.2 | EPDnew ENCODE dbSUPER | 650.7 | 0.0 | 0 | 1.3 | CEBPB CREB1 ATF7 FOS ATF2 | RND3 GC02M150536 LOC105373685 | |
| GH02J150525 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 10.6 | +10.7 | 10695 | 5.2 | PKNOX1 SMAD1 NEUROD1 SIN3A BMI1 RAD21 RFX5 ATF7 FOS RCOR1 | RND3 LOC105373685 | |
| GH02J150617 | Enhancer | 1.4 | FANTOM5 Ensembl ENCODE dbSUPER | 8.3 | -81.4 | -81374 | 5.1 | JUN ZNF133 ZNF384 POLR2A ZNF366 SCRT2 NFE2 ATF7 FOSL2 FOS | ENSG00000232359 RND3 TNFAIP6 GC02M150536 LOC101929282 | |
| GH02J150642 | Enhancer | 1 | FANTOM5 ENCODE dbSUPER | 5.7 | -105.3 | -105286 | 2.8 | SP1 JUND POLR2A FOSL2 FOS FOXA1 | RND3 TNFAIP6 GC02M150536 GC02P150679 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around RND3 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the RND3 gene promoter:
-
- p300
- En-1
- IRF-7A
- PPAR-alpha
- YY1
- Arnt
- Max1
- AhR
- USF2
- USF1
Regulatory Element Products
Genomic Locations for RND3 Gene
Genomic Locations for RND3 Gene
- chr2:150,468,193-150,539,011
- (GRCh38/hg38)
- Size:
- 70,819 bases
- Orientation:
- Minus strand
- chr2:151,324,709-151,395,525
- (GRCh37/hg19)
- Size:
- 70,817 bases
- Orientation:
- Minus strand
Genomic View for RND3 Gene
Genes around RND3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q23.3 by Entrez Gene
- 2q23.3 by HGNC
- 2q23.3 by Ensembl
RND3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RND3 Gene
Proteins for RND3 Gene
-
Protein details for RND3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P61587-RND3_HUMAN
- Recommended name:
- Rho-related GTP-binding protein RhoE
- Protein Accession:
- P61587
- D3DP95
- P52199
Protein attributes for RND3 Gene
- Size:
- 244 amino acids
- Molecular mass:
- 27368 Da
- Quaternary structure:
-
- Binds ROCK1 (By similarity). Interacts with UBXD5.
Protein Expression for RND3 Gene
Post-translational modifications for RND3 Gene
Other Protein References for RND3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for RND3 (RND3)
-
Custom Antibody ServicesOriGene Antibodies for RND3
- Novus Biologicals Antibodies for RND3
-
Abcam antibodies for RND3
- Invitrogen Antibodies for RND3 (AFLGC-RND3)
-
Boster Bio Antibodies for RND3
-
Santa Cruz Biotechnology (SCBT) Antibodies for RND3
- Sino Biological Antibodies for RND3
Protein Products
-
OriGene Purified Proteins for RND3
- Search Origene for MassSpec and Protein Over-expression Lysates for RND3
- Origene Custom Protein Services for RND3
- ProSpec Recombinant Proteins for RND3
-
Abcam proteins for RND3
Assay Products
- antibodies-online: Search results for available RND3 related products ranked by validation data
No data available for DME Specific Peptides for RND3 Gene
Domains & Families for RND3 Gene
Gene Families for RND3 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for RND3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for RND3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P61587- Family:
-
- Belongs to the small GTPase superfamily. Rho family.
Function for RND3 Gene
Molecular function for RND3 Gene
- UniProtKB/Swiss-Prot Function:
- Binds GTP but lacks intrinsic GTPase activity and is resistant to Rho-specific GTPase-activating proteins.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000166 | nucleotide binding | IEA | -- |
| GO:0003924 | GTPase activity | IEA | -- |
| GO:0005515 | protein binding | IPI | 23622247 |
| GO:0005525 | GTP binding | IEA | -- |
| GO:0019901 | protein kinase binding | IBA | -- |
Phenotypes for RND3 Gene
- MGI mutant phenotypes for RND3:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for RND3:
-
- Decreased focal adhesion (FA) area, decreased FA length, decreased FA mean intensity, increased number of small and round FAs, increased FA abundance
- Decreased shRNA abundance (Z-score < -2)
- Increased shRNA abundance (Z-score > 2)
- Decreased cell migration
- Decreased viability
- no effect
- Increased vaccinia virus (VACV) infection
- Resistant to vaccinia virus (VACV-A4L) infection
Animal Models for RND3 Gene
- MGI Knock Outs for RND3:
-
- Rnd3 Rnd3<tm1b(EUCOMM)Hmgu>
Animal Model Products
-
Taconic Biosciences Mouse Models for RND3
- Cyagen custom Knockout/knockin (KOKI) mouse models for RND3
-
CRISPR Products
-
OriGene CRISPR knockouts for RND3
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for RND3
- genomics-online: gRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
- Applied Biological Materials CRISPR for RND3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for RND3
- GenScript: Design CRISPR guide RNA sequences for RND3
miRNA for RND3 Gene
- miRTarBase miRNAs that target RND3
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for RND3
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- genomics-online: shRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
Clone Products
- Sino Biological Human cDNA Clone for RND3
- Addgene plasmids for RND3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for RND3
- Applied Biological Materials Clones for RND3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for RND3
No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RND3 Gene
Localization for RND3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for RND3 Gene
- Golgi apparatus membrane; Peripheral membrane protein.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| golgi apparatus | 5 |
| cytosol | 3 |
| cytoskeleton | 2 |
| nucleus | 2 |
| mitochondrion | 1 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | -- |
| GO:0005622 | intracellular | IEA | -- |
| GO:0005737 | cytoplasm | IBA | -- |
| GO:0005794 | Golgi apparatus | IEA | -- |
| GO:0005886 | COLOCALIZES_WITH plasma membrane | IBA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for RND3 Gene
Pathways & Interactions for RND3 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | G-AlphaQ Signaling | ||
| 2 | GPCR Pathway |
.73
.62
|
|
| 3 | ERK Signaling |
.49
|
|
| 4 | Actin Nucleation by ARP-WASP Complex | ||
| 5 | Apoptotic Pathways in Synovial Fibroblasts | ||
Pathways by source for RND3 Gene
1 Cell Signaling Technology pathway for RND3 Gene
Interacting Proteins for RND3 Gene
Selected Interacting proteins:
ENSP00000263895
P61587-RND3_HUMAN
for RND3 Gene via
STRING
UniProtKB
MINT
IID
GPS-Prot Interaction Network for RND3
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007015 | actin filament organization | IBA | -- |
| GO:0007155 | cell adhesion | TAS | 9531558 |
| GO:0007163 | establishment or maintenance of cell polarity | IBA | -- |
| GO:0007264 | small GTPase mediated signal transduction | IEA | -- |
| GO:0007266 | Rho protein signal transduction | IBA | -- |
Drugs & Compounds for RND3 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Guanosine triphosphate | Experimental | Pharma | Target | 0 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
Drug Products
Transcripts for RND3 Gene
mRNA/cDNA for RND3 Gene
- (2) REFSEQ mRNAs :
- (13) Additional mRNA sequences :
- (223) Selected AceView cDNA sequences:
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000375734 2777 bps (uc002txe.4)
- ENST00000263895 2711 bps (uc002txg.4)
- ENST00000409557 2372 bps (uc061ooi.1)
- ENST00000497865 880 bps (uc061ooj.1)
- ENST00000473639 432 bps (uc061ook.1)
Unigene Clusters for RND3 Gene
- Rho family GTPase 3:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for RND3
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for RND3
- genomics-online: gRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
- Applied Biological Materials CRISPR for RND3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for RND3
- GenScript: Design CRISPR guide RNA sequences for RND3
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for RND3
- Browse OriGene Inhibitory RNA Products For RND3
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RND3
- genomics-online: shRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
Clone Products
- Sino Biological Human cDNA Clone for RND3
- Addgene plasmids for RND3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for RND3
- Applied Biological Materials Clones for RND3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | · | 7c | · | 7d |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||
| SP2: | - | - | |||||||||||||||||||||
| SP3: | - | ||||||||||||||||||||||
| SP4: |
Expression for RND3 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
- Inner Cell Mass (Early Embryonic Tissues)
-
Testis (Reproductive System)
- Pre-Sertoli Cells Testis Cord
- Testicular Interstitial Cells Testis Interstitium
- Endothelium (Cardiovascular System)
-
Ovary (Reproductive System)
- Ovarian Mesenchymal Stroma Cells Ovary Interstitium
- Neural Tube (Nervous System)
-
Smooth Muscle (Muscoskeletal System)
-
Larynx (Respiratory System)
This gene is overexpressed in Fetal Brain (28.5), Spleen (22.8), Prostate (9.6), and Retina (8.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for RND3 Gene
NURSA nuclear receptor signaling pathways regulating expression of RND3 Gene:
RND3SOURCE GeneReport for Unigene cluster for RND3 Gene:
Hs.6838mRNA Expression by UniProt/SwissProt for RND3 Gene:
P61587-RND3_HUMAN
Tissue specificity:
Ubiquitous.
Evidence on tissue expression from TISSUES for RND3 Gene
- Nervous system(4.7)
- Kidney(4.4)
- Spleen(4.4)
- Skin(2.7)
- Liver(2.6)
- Heart(2.1)
Primer Products
-
OriGene qPCR primer pairs for RND3
-
OriGene qPCR primer pairs and template standards for RND3
- genomics-online: primer clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
Gene Expression Assay Products
No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for RND3 Gene
Orthologs for RND3 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | RND3 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | RND3 34 |
|
OneToOne | |
| LOC483917 33 |
|
||||
| oppossum (Monodelphis domestica) |
Mammalia | RND3 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | RND3 34 33 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Rnd3 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Rnd3 33 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | RND3 34 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | RND3 34 33 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | RND3 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | rnd3 33 |
|
||
| Str.17125 33 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.4080 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | rnd3a 34 33 |
|
OneToMany | |
| rnd3b 34 |
|
OneToMany | |||
| idibd2919 33 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.8918 33 |
|
- Species where no ortholog for RND3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for RND3 Gene
- ENSEMBL:
- Gene Tree for RND3 (if available)
- TreeFam:
- Gene Tree for RND3 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for RND3: view image
Paralogs for RND3 Gene
(25) SIMAP similar genes for RND3 Gene using alignment to 4 proteins:
- RND3_HUMAN
- D3DP96_HUMAN
- E9PFH1_HUMAN
- Q6FGN7_HUMAN
Variants for RND3 Gene
| SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000043471 | -- | 150,472,125(-) | G/A | intron_variant | |
| rs1000158259 | -- | 150,472,174(-) | T/C | intron_variant | |
| rs1000221682 | -- | 150,478,627(-) | C/A | intron_variant | |
| rs1000267152 | -- | 150,478,870(-) | G/A | intron_variant | |
| rs1000329829 | -- | 150,483,798(-) | T/C | intron_variant |
Residual Variation Intolerance Score:
32% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.49;
10.56% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for RND3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RND3
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RND3 Gene
Disorders for RND3 Gene
Additional Disease Information for RND3
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for RND3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RND3 Gene
Publications for RND3 Gene
- Identification of a novel human Rho protein with unusual properties: GTPase deficiency and in vivo farnesylation. (PMID: 8649376) Foster R … Settleman J (Molecular and cellular biology 1996) 2 3 4 22 58
- A genome-wide association search for type 2 diabetes genes in African Americans. (PMID: 22238593) Palmer ND … Sladek R (PloS one 2012) 3 44 58
- Rnd3 regulation of the actin cytoskeleton promotes melanoma migration and invasive outgrowth in three dimensions. (PMID: 19244113) Klein RM … Aplin AE (Cancer research 2009) 3 22 58
- RhoE inhibits 4E-BP1 phosphorylation and eIF4E function impairing cap-dependent translation. (PMID: 19850923) Villalonga P … Ridley AJ (The Journal of biological chemistry 2009) 3 22 58
- PDK1 regulates cancer cell motility by antagonising inhibition of ROCK1 by RhoE. (PMID: 18204440) Pinner S … Sahai E (Nature cell biology 2008) 3 22 58
Products for RND3 Gene
- R&D Systems Antibodies for RND3 (RND3)
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- GenScript: Design CRISPR guide RNA sequences for RND3
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- CloneReady with Over 120,000 Genes
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- Novus Biologicals Tissue Microarrays
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- Find your next knockout model in the Taconic Knockout Repository
- Genetically Engineered Models Available Immediately
- Humanized Mice
- Invitrogen Antibodies for RND3 (AFLGC-RND3)
- Cyagen custom Knockout/knockin (KOKI) mouse models for RND3
- Addgene plasmids for RND3
- antibodies-online: Search results for 38 available RND3 Antibodies ranked by validation data
- Compare Top RND3 Antibodies
- antibodies-online: Search results for available RND3 related products ranked by validation data
- antibodies-online: Search results for 13 available RND3 Proteins ranked by validation data
- Compare Top RND3 Proteins
- Santa Cruz Biotechnology (SCBT) Antibodies for RND3
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- Horizon Cell Lines for RND3
- genomics-online: cdna clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
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- Overview of 121 available RND3 gene related products
- genomics-online: gRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
- genomics-online: primer clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
- genomics-online: shRNA clones - Search results for 121 available RND3 gene related products
- Overview of 121 available RND3 gene related products
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for RND3
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Sources for RND3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
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