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Aliases for RNASEH2B-AS1 Gene

Subcategory (RNA class) for RNASEH2B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNASEH2B-AS1 Gene

  • RNASEH2B Antisense RNA 1 2 3 5
  • RNASEH2B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for RNASEH2B-AS1 Gene

Previous GeneCards Identifiers for RNASEH2B-AS1 Gene

  • GC00U933985
  • GC13M051457

Summaries for RNASEH2B-AS1 Gene

GeneCards Summary for RNASEH2B-AS1 Gene

RNASEH2B-AS1 (RNASEH2B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RNASEH2B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNASEH2B-AS1 Gene

Genomics for RNASEH2B-AS1 Gene

GeneHancer (GH) Regulatory Elements for RNASEH2B-AS1 Gene

Promoters and enhancers for RNASEH2B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I050908 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.6 -2.4 -2350 10 HDGF FOXA2 ARNT SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B E2F8 RNASEH2B RNASEH2B-AS1 DLEU7-AS1 DLEU7 KCNRG SERPINE3 TRIM13 RPS4XP16 INTS6 GC13M050919
GH13I050121 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 23 +784.0 784008 10.1 FEZF1 DMAP1 IRF4 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 NBN DLEU2 ENSG00000274270 SETDB2 TRIM13 KCNRG DLEU1 RNASEH2B-AS1 CTAGE10P RNASEH2B EBPL
GH13I050890 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 18.3 +17.7 17729 4.9 MAX BATF IRF4 POLR2A RCOR1 BCLAF1 IKZF2 RUNX3 CHD2 SRF RNASEH2B-AS1 RNASEH2B DLEU7 DLEU7-AS1 KCNRG GC13P050857
GH13I050809 Enhancer 0.9 Ensembl ENCODE 15.5 +99.9 99850 2.1 MEIS2 FOXA2 ZSCAN4 POLR2A ATF7 ETV6 BCLAF1 IKZF2 RUNX3 JUNB RNASEH2B-AS1 DLEU7 RNASEH2B DLEU7-AS1 GC13P050809 RNA5SP28 GC13M050813
GH13I050940 Enhancer 0.5 dbSUPER 27.1 -31.0 -30952 1.6 TBX3 GATAD2A CTBP1 ZGPAT HMG20A TCF7L2 RNASEH2B RNASEH2B-AS1 GC13P050938 GC13M050954 GC13M050955
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNASEH2B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNASEH2B-AS1 Gene

Genomic Locations for RNASEH2B-AS1 Gene
chr13:50,862,172-50,910,764
(GRCh38/hg38)
Size:
48,593 bases
Orientation:
Minus strand
chr13:51,450,822-51,484,848
(GRCh37/hg19)

Genomic View for RNASEH2B-AS1 Gene

Genes around RNASEH2B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNASEH2B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNASEH2B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNASEH2B-AS1 Gene

Proteins for RNASEH2B-AS1 Gene

Post-translational modifications for RNASEH2B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNASEH2B-AS1 Gene

Domains & Families for RNASEH2B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNASEH2B-AS1 Gene

Function for RNASEH2B-AS1 Gene

Phenotypes From GWAS Catalog for RNASEH2B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNASEH2B-AS1 Gene

Localization for RNASEH2B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNASEH2B-AS1 Gene

Pathways & Interactions for RNASEH2B-AS1 Gene

SuperPathways for RNASEH2B-AS1 Gene

No Data Available

Interacting Proteins for RNASEH2B-AS1 Gene

Gene Ontology (GO) - Biological Process for RNASEH2B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNASEH2B-AS1 Gene

Drugs & Compounds for RNASEH2B-AS1 Gene

No Compound Related Data Available

Transcripts for RNASEH2B-AS1 Gene

mRNA/cDNA for RNASEH2B-AS1 Gene

(1) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RNASEH2B-AS1 Gene

RNASEH2B antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNASEH2B-AS1 Gene

No ASD Table

Relevant External Links for RNASEH2B-AS1 Gene

GeneLoc Exon Structure for
RNASEH2B-AS1
ECgene alternative splicing isoforms for
RNASEH2B-AS1

Expression for RNASEH2B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNASEH2B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RNASEH2B-AS1 Gene:

Hs.741501
genes like me logo Genes that share expression patterns with RNASEH2B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNASEH2B-AS1 Gene

Orthologs for RNASEH2B-AS1 Gene

Evolution for RNASEH2B-AS1 Gene

ENSEMBL:
Gene Tree for RNASEH2B-AS1 (if available)
TreeFam:
Gene Tree for RNASEH2B-AS1 (if available)

No data available for Orthologs for RNASEH2B-AS1 Gene

Paralogs for RNASEH2B-AS1 Gene

No data available for Paralogs for RNASEH2B-AS1 Gene

Variants for RNASEH2B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RNASEH2B-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs112702177 likely-benign, Aicardi Goutieres syndrome 50,909,867(-) G/C intron_variant
rs184573722 uncertain-significance, Aicardi Goutieres syndrome 50,909,965(-) C/T intron_variant
rs553446261 uncertain-significance, Aicardi Goutieres syndrome 50,909,960(-) C/G intron_variant
rs553965425 uncertain-significance, Aicardi Goutieres syndrome 50,909,678(-) C/G intron_variant
rs577725827 uncertain-significance, Aicardi Goutieres syndrome 50,909,849(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RNASEH2B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv561618 CNV loss 21841781
nsv826645 CNV loss 20364138
nsv951085 CNV duplication 24416366

Additional Variant Information for RNASEH2B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNASEH2B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNASEH2B-AS1 Gene

Disorders for RNASEH2B-AS1 Gene

Additional Disease Information for RNASEH2B-AS1

No disorders were found for RNASEH2B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNASEH2B-AS1 Gene

Publications for RNASEH2B-AS1 Gene

No publications were found for RNASEH2B-AS1 Gene.

Products for RNASEH2B-AS1 Gene

Sources for RNASEH2B-AS1 Gene

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