Aliases for RNA5SP89 Gene

Aliases for RNA5SP89 Gene

  • RNA, 5S Ribosomal Pseudogene 89 2 3 5
  • RNA, 5S Ribosomal 89 2 3
  • RN5S89 3

External Ids for RNA5SP89 Gene

Previous HGNC Symbols for RNA5SP89 Gene

  • RN5S89

Previous GeneCards Identifiers for RNA5SP89 Gene

  • GC02P028908

Summaries for RNA5SP89 Gene

GeneCards Summary for RNA5SP89 Gene

RNA5SP89 (RNA, 5S Ribosomal Pseudogene 89) is a Pseudogene.

Additional gene information for RNA5SP89 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP89 Gene

Genomics for RNA5SP89 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP89 Gene

Promoters and enhancers for RNA5SP89 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J028680 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.1 -1073 5 SMARCE1 ZNF217 ELF1 RELA L3MBTL2 TEAD4 ZNF652 SP1 ZFX BACH1 LOC105374384 RNA5SP89 PPP1CB LOC112267877 ENSG00000230730 WDR43 FOSL2 HSALNG0013890
GH02J028691 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.4 8425 2.8 SREBF1 MLX NR2F1 NR2F6 MIXL1 HLF ELF3 CEBPG KAT8 ZNF644 RNA5SP89 lnc-PPP1CB-1
GH02J028705 Enhancer 1.1 Ensembl ENCODE 0.3 +24.6 24643 6.4 ZBTB40 FOXA1 SMARCE1 TCF7L2 USF2 HLF TEAD4 ELF3 CBFA2T2 CEBPG TRMT61B PPP1CB ENSG00000230730 SPDYA WDR43 lnc-PPP1CB-1 RNA5SP89 LOC100505774 LOC112267877
GH02J028687 Enhancer 0.5 Ensembl 0.6 +3.6 3625 2 HLF MGA ESRRA NFIC ZFHX2 FOS TRMT61B WDR43 RNA5SP89 lnc-PPP1CB-1
GH02J028701 Enhancer 0.9 Ensembl dbSUPER 0.4 +18.9 18924 1.8 NR2F1 NR2F6 RAD21 ELF3 SP1 RXRA GATAD2A RXRB SOX13 TGIF2 TRMT61B lnc-PPP1CB-1 RNA5SP89
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP89 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP89 Gene

Genomic Locations for RNA5SP89 Gene
chr2:28,683,976-28,684,083
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand
chr2:28,906,842-28,906,949
(GRCh37/hg19)
Size:
108 bases
Orientation:
Plus strand

Genomic View for RNA5SP89 Gene

Genes around RNA5SP89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP89 Gene

Proteins for RNA5SP89 Gene

Post-translational modifications for RNA5SP89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP89 Gene

Domains & Families for RNA5SP89 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP89 Gene

Function for RNA5SP89 Gene

Phenotypes From GWAS Catalog for RNA5SP89 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP89 Gene

Localization for RNA5SP89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP89 Gene

Pathways & Interactions for RNA5SP89 Gene

PathCards logo

SuperPathways for RNA5SP89 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP89 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP89 Gene

Drugs & Compounds for RNA5SP89 Gene

No Compound Related Data Available

Transcripts for RNA5SP89 Gene

mRNA/cDNA for RNA5SP89 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP89 Gene

No ASD Table

Relevant External Links for RNA5SP89 Gene

GeneLoc Exon Structure for
RNA5SP89
ECgene alternative splicing isoforms for
RNA5SP89

Expression for RNA5SP89 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP89 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP89 Gene:

RNA5SP89
genes like me logo Genes that share expression patterns with RNA5SP89: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP89 Gene

Orthologs for RNA5SP89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 33
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 33
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 33
  • 48 (a)
OneToMany
Species where no ortholog for RNA5SP89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP89 Gene

ENSEMBL:
Gene Tree for RNA5SP89 (if available)
TreeFam:
Gene Tree for RNA5SP89 (if available)

Paralogs for RNA5SP89 Gene

No data available for Paralogs for RNA5SP89 Gene

Variants for RNA5SP89 Gene

Additional Variant Information for RNA5SP89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP89 Gene

Disorders for RNA5SP89 Gene

No disorders were found for RNA5SP89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP89 Gene

Publications for RNA5SP89 Gene

No publications were found for RNA5SP89 Gene.

No data available for External Links for RNA5SP89 Gene

Products for RNA5SP89 Gene

Sources for RNA5SP89 Gene