Aliases for RNA5SP75 Gene

Aliases for RNA5SP75 Gene

  • RNA, 5S Ribosomal Pseudogene 75 2 3 5
  • RNA, 5S Ribosomal 75 2 3
  • RN5S75 3

External Ids for RNA5SP75 Gene

Previous HGNC Symbols for RNA5SP75 Gene

  • RN5S75

Summaries for RNA5SP75 Gene

GeneCards Summary for RNA5SP75 Gene

RNA5SP75 (RNA, 5S Ribosomal Pseudogene 75) is a Pseudogene.

Additional gene information for RNA5SP75 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP75 Gene

Genomics for RNA5SP75 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP75 Gene

Promoters and enhancers for RNA5SP75 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J204705 Enhancer 1.1 ENCODE dbSUPER 750.6 +0.7 737 2 ZBTB40 SMARCE1 CC2D1A ELF1 L3MBTL2 ZC3H8 ZNF148 GTF2F1 CSDE1 ZFX RNA5SP75 ZC3H11A SNRPE PPP1R15B MDM4 ELK4 RBBP5 LAX1 ENSG00000240219 ZBED6
GH01J204708 Promoter/Enhancer 0.9 Ensembl ENCODE 750.6 -1.6 -1570 1.6 CREB1 ZNF629 JUN JUND DPF2 FOSL2 FOXA1 FOS KDM1A IKZF1 RNA5SP75 NFASC LOC105371693
GH01J204709 Enhancer 1.1 ENCODE dbSUPER 0.6 -4.1 -4085 3.3 ZNF24 SMARCE1 CC2D1A ELF1 POU5F1 TEAD4 SP1 ZKSCAN8 ZNF148 GTF2F1 MDM4 ZC3H11A ELK4 PPP1R15B ZBED6 RBBP5 SNRPE LOC100420878 LAX1 ENSG00000223505
GH01J204714 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.3 -7271 2.6 L3MBTL2 CSDE1 MLLT1 IKZF1 CREB1 RFX1 REST TRIM22 IKZF2 LARP7 LOC105371693 MDM4 RNA5SP75
GH01J204692 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +14.7 14729 4.6 SMARCE1 L3MBTL2 RBM39 DACH1 ZKSCAN8 GTF2F1 ZFX MAFK MLLT1 BACH1 MDM4 ZC3H11A ELK4 PPP1R15B ZBED6 ENSG00000228153 LOC100420878 SNRPE ENSG00000251861 ENSG00000240710
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP75 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP75 Gene

Genomic Locations for RNA5SP75 Gene
chr1:204,707,320-204,707,430
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand
chr1:204,676,448-204,676,558
(GRCh37/hg19)
Size:
111 bases
Orientation:
Minus strand

Genomic View for RNA5SP75 Gene

Genes around RNA5SP75 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP75 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP75 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP75 Gene

Proteins for RNA5SP75 Gene

Post-translational modifications for RNA5SP75 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP75 Gene

Domains & Families for RNA5SP75 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP75 Gene

Function for RNA5SP75 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP75 Gene

Localization for RNA5SP75 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP75 Gene

Pathways & Interactions for RNA5SP75 Gene

PathCards logo

SuperPathways for RNA5SP75 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP75 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP75 Gene

Drugs & Compounds for RNA5SP75 Gene

No Compound Related Data Available

Transcripts for RNA5SP75 Gene

mRNA/cDNA for RNA5SP75 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP75 Gene

No ASD Table

Relevant External Links for RNA5SP75 Gene

GeneLoc Exon Structure for
RNA5SP75
ECgene alternative splicing isoforms for
RNA5SP75

Expression for RNA5SP75 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP75 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP75 Gene:

RNA5SP75
genes like me logo Genes that share expression patterns with RNA5SP75: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP75 Gene

Orthologs for RNA5SP75 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP75 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 33
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 33
  • 75 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 33
  • 69 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23806 33
  • 67 (a)
ManyToMany
Species where no ortholog for RNA5SP75 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP75 Gene

ENSEMBL:
Gene Tree for RNA5SP75 (if available)
TreeFam:
Gene Tree for RNA5SP75 (if available)

Paralogs for RNA5SP75 Gene

No data available for Paralogs for RNA5SP75 Gene

Variants for RNA5SP75 Gene

Additional Variant Information for RNA5SP75 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP75

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP75 Gene

Disorders for RNA5SP75 Gene

No disorders were found for RNA5SP75 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP75 Gene

Publications for RNA5SP75 Gene

No publications were found for RNA5SP75 Gene.

No data available for External Links for RNA5SP75 Gene

Products for RNA5SP75 Gene

Sources for RNA5SP75 Gene