Aliases for RNA5SP55 Gene

Aliases for RNA5SP55 Gene

  • RNA, 5S Ribosomal Pseudogene 55 2 3 5
  • RNA, 5S Ribosomal 55 2 3
  • RNA5SP55 5
  • RN5S55 3

External Ids for RNA5SP55 Gene

Previous HGNC Symbols for RNA5SP55 Gene

  • RN5S55

Previous GeneCards Identifiers for RNA5SP55 Gene

  • GC01M117507

Summaries for RNA5SP55 Gene

GeneCards Summary for RNA5SP55 Gene

RNA5SP55 (RNA, 5S Ribosomal Pseudogene 55) is a Pseudogene.

Additional gene information for RNA5SP55 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP55 Gene

Genomics for RNA5SP55 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116963 Enhancer 0.3 Ensembl 250.7 -0.7 -730 1.6 IKZF1 RUNX3 RNA5SP55 NAP1L4P1 piR-48799-002 CD101 PTGFRN
GH01J116970 Enhancer 0.3 Ensembl 0.4 -9.7 -9730 2 CEBPB FOS PTGFRN NAP1L4P1 piR-48799-002 RNA5SP55 CD101
GH01J116967 Enhancer 0.2 Ensembl 0.7 -4.0 -4029 0.2 CD101 NAP1L4P1 RNA5SP55 piR-48799-002 PTGFRN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP55 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP55 Gene

Latest Assembly
chr1:116,962,347-116,962,471
(GRCh38/hg38)
Size:
125 bases
Orientation:
Minus strand

Previous Assembly
chr1:117,504,969-117,505,093
(GRCh37/hg19 by Entrez Gene)
Size:
125 bases
Orientation:
Minus strand

chr1:117,504,969-117,505,093
(GRCh37/hg19 by Ensembl)
Size:
125 bases
Orientation:
Minus strand

Genomic View for RNA5SP55 Gene

Genes around RNA5SP55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP55 Gene

Proteins for RNA5SP55 Gene

Post-translational modifications for RNA5SP55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP55 Gene

Domains & Families for RNA5SP55 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP55 Gene

Function for RNA5SP55 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP55 Gene

Localization for RNA5SP55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP55 Gene

Pathways & Interactions for RNA5SP55 Gene

PathCards logo

SuperPathways for RNA5SP55 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP55 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP55 Gene

Drugs & Compounds for RNA5SP55 Gene

No Compound Related Data Available

Transcripts for RNA5SP55 Gene

mRNA/cDNA for RNA5SP55 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP55 Gene

No ASD Table

Relevant External Links for RNA5SP55 Gene

GeneLoc Exon Structure for
RNA5SP55

Expression for RNA5SP55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP55 Gene

genes like me logo Genes that share expression patterns with RNA5SP55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP55 Gene

Orthologs for RNA5SP55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP55 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 89 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 64 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 60 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm24738 31
  • 51 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 31
  • 57 (a)
OneToMany
Species where no ortholog for RNA5SP55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP55 Gene

ENSEMBL:
Gene Tree for RNA5SP55 (if available)
TreeFam:
Gene Tree for RNA5SP55 (if available)

Paralogs for RNA5SP55 Gene

No data available for Paralogs for RNA5SP55 Gene

Variants for RNA5SP55 Gene

Additional Variant Information for RNA5SP55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP55 Gene

Disorders for RNA5SP55 Gene

No disorders were found for RNA5SP55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP55 Gene

Publications for RNA5SP55 Gene

No publications were found for RNA5SP55 Gene.

Products for RNA5SP55 Gene

Sources for RNA5SP55 Gene