Aliases for RNA5SP54 Gene
External Ids for RNA5SP54 Gene
- HGNC: 42831
- Entrez Gene: 100873292
- Ensembl: ENSG00000252760
Previous HGNC Symbols for RNA5SP54 Gene
- RN5S54
Previous GeneCards Identifiers for RNA5SP54 Gene
- GC01P111587
Summaries for RNA5SP54 Gene
GeneCards Summary for RNA5SP54 Gene
RNA5SP54 (RNA, 5S Ribosomal Pseudogene 54) is a Pseudogene.
Additional gene information for RNA5SP54 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP54 Gene
Genomics for RNA5SP54 Gene
GeneHancer (GH) Regulatory Elements for RNA5SP54 Gene
Promoters and enhancers for RNA5SP54 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01I111044 | Enhancer | 0.8 | ENCODE | 0.8 | +3.5 | 3458 | 0.9 | ELF3 PKNOX1 FOXA2 MLX ARID4B DMAP1 BATF RAD21 RARA CREM | DRAM2 RNA5SP54 CEPT1 | |
| GH01I111126 | Enhancer | 1.1 | Ensembl ENCODE dbSUPER | 0.2 | +86.8 | 86778 | 3.7 | SMAD1 PAX8 EBF1 IRF4 RELA POLR2A NFATC1 ATF7 ETV6 BCLAF1 | DRAM2 RBM15-AS1 CEPT1 RNA5SP54 | |
| GH01I111101 | Enhancer | 0.9 | ENCODE | 0.2 | +60.5 | 60460 | 1.5 | HDAC1 TAF9B RB1 NFIB NFRKB CHAMP1 TCF12 ATF7 NCOA1 CEBPB | DRAM2 RBM15-AS1 CEPT1 RNA5SP54 | |
| GH01I111131 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.2 | +91.0 | 91027 | 2.6 | SMARCA5 ZNF217 GATA3 POLR2A CEBPB BCLAF1 RELA | DRAM2 RBM15-AS1 CEPT1 RNA5SP54 | |
| GH01I111110 | Enhancer | 0.7 | ENCODE | 0.2 | +68.6 | 68580 | 0.2 | ELF3 TFAP4 FOXA2 SAP130 ARID4B CEBPG ZNF644 ZNF48 RAD21 RARA | DRAM2 CEPT1 RNA5SP54 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around RNA5SP54 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for RNA5SP54 Gene
Genomic Locations for RNA5SP54 Gene
- chr1:111,041,834-111,041,925
- (GRCh38/hg38)
- Size:
- 92 bases
- Orientation:
- Plus strand
- chr1:111,584,456-111,584,547
- (GRCh37/hg19)
Genomic View for RNA5SP54 Gene
Genes around RNA5SP54 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p13.3 by Ensembl
- 1p13.3 by Entrez Gene
- 1p13.3 by HGNC
RNA5SP54 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNA5SP54 Gene
Proteins for RNA5SP54 Gene
Post-translational modifications for RNA5SP54 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for RNA5SP54
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP54
- Origene Custom Protein Services for RNA5SP54
- Search GeneTex for Proteins for RNA5SP54
No data available for DME Specific Peptides for RNA5SP54 Gene
Domains & Families for RNA5SP54 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP54 Gene
Function for RNA5SP54 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNA5SP54
-
- Search ViGene Biosciences for RNA5SP54
CRISPR Products
- Browse CRISPR knockouts for RNA5SP54
- Applied Biological Materials CRISPR for RNA5SP54
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for RNA5SP54
Inhibitory RNA Products
- Search ViGene Biosciences for RNA5SP54
Clone Products
- GenScript: Custom all cDNA clones Services for RNA5SP54
- VectorBuilder custom plasmid, inducible vectors for RNA5SP54
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNA5SP54
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for RNA5SP54
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP54 Gene
Localization for RNA5SP54 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP54 Gene
Transcripts for RNA5SP54 Gene
mRNA/cDNA for RNA5SP54 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for RNA5SP54
- Applied Biological Materials CRISPR for RNA5SP54
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for RNA5SP54
Inhibitory RNA Products
- Search ViGene Biosciences for RNA5SP54
Clone Products
- GenScript: Custom all cDNA clones Services for RNA5SP54
- VectorBuilder custom plasmid, inducible vectors for RNA5SP54
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNA5SP54
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for RNA5SP54
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for RNA5SP54 Gene
NURSA nuclear receptor signaling pathways regulating expression of RNA5SP54 Gene:
RNA5SP54
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP54 Gene
Orthologs for RNA5SP54 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | 5S_rRNA 34 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | 5S_rRNA 34 |
|
OneToMany | |
| cow (Bos Taurus) |
Mammalia | 5S_rRNA 34 |
|
ManyToMany | |
| dog (Canis familiaris) |
Mammalia | 5S_rRNA 34 |
|
OneToMany | |
| mouse (Mus musculus) |
Mammalia | Gm24009 34 |
|
OneToMany |
- Species where no ortholog for RNA5SP54 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RNA5SP54 Gene
No data available for Paralogs for RNA5SP54 Gene
Variants for RNA5SP54 Gene
Additional Variant Information for RNA5SP54 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNA5SP54
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP54 Gene
Disorders for RNA5SP54 Gene
No disorders were found for RNA5SP54 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP54 Gene
Publications for RNA5SP54 Gene
No publications were found for RNA5SP54 Gene.
Products for RNA5SP54 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP54
- Origene Custom Protein Services for RNA5SP54
- Browse OriGene Inhibitory RNA Products For RNA5SP54
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNA5SP54
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNA5SP54
- GenScript: Custom all cDNA clones Services for RNA5SP54
- GenScript Custom Purified and Recombinant Proteins Services for RNA5SP54
- GenScript Custom Assay Services for RNA5SP54
- GenScript Custom overexpressing Cell Line Services for RNA5SP54
- Browse GenScript CRISPR for RNA5SP54
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
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- Plasmid Preparation
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNA5SP54
- VectorBuilder custom plasmid, inducible vectors for RNA5SP54
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RNA5SP54
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for RNA5SP54
- Search GeneTex for Proteins for RNA5SP54
- Search ViGene Biosciences for RNA5SP54
Sources for RNA5SP54 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
