RNA5SP534 Gene (Pseudogene)

RNA, 5S Ribosomal Pseudogene 534

GC01M207709
GIFtS:
4
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Aliases for RNA5SP534 Gene

Aliases for RNA5SP534 Gene

  • RNA, 5S Ribosomal Pseudogene 534 2 3 5
  • RNA5SP534 5

External Ids for RNA5SP534 Gene

Summaries for RNA5SP534 Gene

GeneCards Summary for RNA5SP534 Gene

RNA5SP534 (RNA, 5S Ribosomal Pseudogene 534) is a Pseudogene.

Additional gene information for RNA5SP534 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP534 Gene

Genomics for RNA5SP534 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNA5SP534 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J207707 Enhancer 0.9 Ensembl ENCODE 600.7 +1.4 1380 1.4 PRDM10 ZNF629 PRDM1 ZSCAN4 ZBTB44 NFE2 ZEB1 CEBPB ZNF316 NR2C2 RNA5SP534 CD46 piR-42491-009 lnc-CD34-7 CR1L
GH01J207698 Enhancer 0.8 ENCODE 0.4 +10.1 10050 0.2 CREB1 CTCF PHF21A REST NR2C1 RAD21 HDAC1 ARNT ZNF184 SMARCA5 RNA5SP534 piR-42491-009 CD46 CR1L lnc-CD34-7
GH01J207691 Enhancer 0.5 ENCODE 0.4 +17.0 17010 0.2 FOXA1 PKNOX1 FOXM1 SPI1 CHAMP1 CC2D1A piR-42491-009 RNA5SP534 CR1L CD46 lnc-CD34-7
GH01J207702 Enhancer 0.2 Ensembl 0.4 +7.0 6980 0.2 CD46 RNA5SP534 piR-42491-009 lnc-CD34-7 CR1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP534 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP534 Gene

Genomic Locations for RNA5SP534 Gene
chr1:207,708,798-207,709,081
(GRCh38/hg38)
Size:
284 bases
Orientation:
Minus strand

Genomic View for RNA5SP534 Gene

Genes around RNA5SP534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP534 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNA5SP534 Gene

Proteins for RNA5SP534 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNA5SP534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP534 Gene

Domains & Families for RNA5SP534 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP534 Gene

Function for RNA5SP534 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP534 Gene

Localization for RNA5SP534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP534 Gene

Pathways & Interactions for RNA5SP534 Gene

PathCards logo

SuperPathways for RNA5SP534 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP534 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP534 Gene

Drugs & Compounds for RNA5SP534 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNA5SP534 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNA5SP534 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP534 Gene

No ASD Table

Relevant External Links for RNA5SP534 Gene

GeneLoc Exon Structure for
RNA5SP534

Expression for RNA5SP534 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP534 Gene

Orthologs for RNA5SP534 Gene

Evolution for RNA5SP534 Gene

ENSEMBL:
Gene Tree for RNA5SP534 (if available)
TreeFam:
Gene Tree for RNA5SP534 (if available)

No data available for Orthologs for RNA5SP534 Gene

Paralogs for RNA5SP534 Gene

No data available for Paralogs for RNA5SP534 Gene

Variants for RNA5SP534 Gene

Additional Variant Information for RNA5SP534 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP534

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP534 Gene

Disorders for RNA5SP534 Gene

No disorders were found for RNA5SP534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP534 Gene

Publications for RNA5SP534 Gene

No publications were found for RNA5SP534 Gene.

No data available for Mastermind for RNA5SP534 Gene

Products for RNA5SP534 Gene

Sources for RNA5SP534 Gene