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Aliases for RNA5SP491 Gene
Aliases for RNA5SP491 Gene
External Ids for RNA5SP491 Gene
- HGNC: 43391
- Entrez Gene: 100873733
- Ensembl: ENSG00000199806
Previous HGNC Symbols for RNA5SP491 Gene
- RN5S491
Previous GeneCards Identifiers for RNA5SP491 Gene
- GC21P038226
Summaries for RNA5SP491 Gene
GeneCards Summary for RNA5SP491 Gene
RNA5SP491 (RNA, 5S Ribosomal Pseudogene 491) is a Pseudogene.
Additional gene information for RNA5SP491 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP491 Gene
Genomics for RNA5SP491 Gene
GeneHancer (GH) Regulatory Elements for RNA5SP491 Gene
Promoters and enhancers for RNA5SP491 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH21J036852 | Enhancer | 0.4 | Ensembl | 500.7 | +0.7 | 690 | 0.8 | ZIC2 SPI1 PRDM1 | RF00001-203 RNA5SP491 lnc-SIM2-3 HLCS RF00017-3701 | |
| GH21J036846 | Enhancer | 0.9 | Ensembl ENCODE | 0.7 | -4.7 | -4710 | 2 | JUND FOS ZNF10 CUX1 TEAD1 ZNF316 FOXA2 ZBTB17 FOSL2 JUN | HLCS RF00001-203 RNA5SP491 RF00017-3703 RF00017-3701 | |
| GH21J036834 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | -16.3 | -16332 | 1.5 | ZIC2 ZNF341 OSR2 ZNF585B WT1 ZBTB17 ZNF263 ZBTB48 IKZF3 ZNF189 | HLCS RF00017-3703 RF00001-203 RNA5SP491 RF00017-3701 | |
| GH21J036839 | Enhancer | 0.4 | Ensembl | 0.4 | -12.6 | -12610 | 0.6 | MAFK BHLHE40 USF2 | HLCS RNA5SP491 RF00001-203 RF00017-3703 RF00017-3701 | |
| GH21J036829 | Enhancer | 0.4 | Ensembl | 0.4 | -22.8 | -22810 | 0.2 | KLF9 EGR2 ZSCAN21 | RF00017-3703 RF00001-203 RNA5SP491 RF00017-3701 HLCS |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RNA5SP491 on UCSC Golden Path with GeneCards custom track
Genomic Locations for RNA5SP491 Gene
Genomic Locations for RNA5SP491 Gene
- chr21:36,851,911-36,852,028
- (GRCh38/hg38)
- Size:
- 118 bases
- Orientation:
- Plus strand
- chr21:38,224,211-38,224,328
- (GRCh37/hg19)
- Size:
- 118 bases
- Orientation:
- Plus strand
Genomic View for RNA5SP491 Gene
Genes around RNA5SP491 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.13 by HGNC
- 21q22.13 by Entrez Gene
- 21q22.13 by Ensembl
RNA5SP491 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNA5SP491 Gene
Proteins for RNA5SP491 Gene
Post-translational modifications for RNA5SP491 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP491
- Origene Custom Protein Services for RNA5SP491
No data available for DME Specific Peptides for RNA5SP491 Gene
Domains & Families for RNA5SP491 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP491 Gene
Function for RNA5SP491 Gene
Phenotypes From GWAS Catalog for RNA5SP491 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP491 - Select products 50% OFF >
- * RNA5SP491 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * RNA5SP491 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for RNA5SP491
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP491 Gene
Localization for RNA5SP491 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP491 Gene
Transcripts for RNA5SP491 Gene
mRNA/cDNA for RNA5SP491 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000362936 118 bps (ENST00000362936.1)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP491 - Select products 50% OFF >
- * RNA5SP491 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * RNA5SP491 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for RNA5SP491
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for RNA5SP491 Gene
- GeneLoc Exon Structure for
- RNA5SP491
Expression for RNA5SP491 Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP491 Gene
Orthologs for RNA5SP491 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | 5S_rRNA 31 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | n-R5s58 31 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | 5S_rRNA 31 |
|
ManyToMany | |
| cow (Bos Taurus) |
Mammalia | 5S_rRNA 31 |
|
ManyToMany | |
| oppossum (Monodelphis domestica) |
Mammalia | 5S_rRNA 31 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | 5S_rRNA 31 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | 5S_rRNA 31 |
|
ManyToMany |
- Species where no ortholog for RNA5SP491 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RNA5SP491 Gene
No data available for Paralogs for RNA5SP491 Gene
Variants for RNA5SP491 Gene
Additional Variant Information for RNA5SP491 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNA5SP491
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP491 Gene
Disorders for RNA5SP491 Gene
No disorders were found for RNA5SP491 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP491 Gene
Publications for RNA5SP491 Gene
No publications were found for RNA5SP491 Gene.
No data available for Mastermind for RNA5SP491 Gene
Products for RNA5SP491 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP491
- Origene Custom Protein Services for RNA5SP491
- Browse OriGene Inhibitory RNA Products For RNA5SP491
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNA5SP491
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNA5SP491
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RNA5SP491
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RNA5SP491
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RNA5SP491
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RNA5SP491
Sources for RNA5SP491 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) H-invDB
- (47) HORDE
- (48) HUGE
- (49) IMGT
- (50) Leiden
- (51) miRBase
- (52) DME
- (53) OriGene
- (54) PubMed
- (55) R&D Systems
- (56) TGDB
- (57) Tocris
- (58) Abcam
- (59) Novus Biologicals
- (60) ProSpec
- (61) Sino Biological
- (62) GenScript
- (63) Qiagen
- (64) OCA
- (65) Proteopedia
- (66) MOPED
- (67) neXtProt
- (68) Reactome
- (69) GeneGo (Thomson Reuters)
- (70) DISEASES
- (71) SIMAP
- (72) GenomeRNAi
- (73) LifeMap
- (74) miRTarBase
- (75) MalaCards
- (76) Invitrogen
- (77) BitterDB
- (78) ESI-BIO
- (79) RefSeq
- (80) BioSystems
- (81) MaxQB
- (82) IUPHAR
- (83) BioGPS
- (84) Illumina
- (85) COMPARTMENTS
- (86) HOMER
- (87) PaxDb
- (88) ApexBio
- (89) Addgene
- (90) antibodies-online
- (91) CYP
- (92) NONCODE
- (93) TreeFam
- (94) PathCards
- (95) GeneReviews
- (96) GeneTex
- (97) Taconic Biosciences
- (98) GTEx
- (99) ProteomicsDB
- (100) SCBT
- (101) DGIdb
- (102) ClinicalTrials
- (103) RVIS
- (104) SIGNOR
- (105) diseasecard
- (106) NIH Rare Diseases
- (107) Orphanet
- (108) UMLS
- (109) GTR
- (110) Disease Ontology
- (111) Genetics Home Reference
- (112) MeSH
- (113) MedlinePlus
- (114) CDC
- (115) NINDS
- (116) NCBI Bookshelf
- (117) ClinVar
- (118) Gene Damage Index
- (119) HPO
- (120) UDN
- (121) VISTA
- (122) FANTOM5
- (123) ENCODE
- (124) ProSci
- (125) Horizon
- (126) The Signaling Pathways Project (SPP)
- (127) IID
- (128) VectorBuilder
- (129) SNPedia
- (130) BRCA Exchange
- (131) CIViC
- (132) ProteoGenix
- (133) dbSUPER
- (134) TISSUES
- (135) Gene ORGANizer
- (136) abm
- (137) Human Protein Atlas
- (138) GWAS Catalog
- (139) Monarch Initiative
- (140) DataMed
- (141) HumanCyc
- (142) genomics-online
- (143) UCNEbase
- (144) EPDnew
- (145) Applied Biosystems
- (146) GlyConnect
- (147) Aminode
- (148) GeneCopoeia
- (149) GPS-Prot
- (150) RNACentral
- (151) LncRNADisease
- (152) LOVD
- (153) miR2Disease
- (154) DiseaseEnhancer
- (155) Boster Bio
- (156) Biorbyt
- (157) Biocompare
- (158) Mastermind
- (159) CTD^2 Dashboard
- (160) CraniofacialAtlas
- (161) GeneImprint
- (162) Synthego
- (163) Bio Basic
- (164) ENA
- (165) GtRNAdb
- (166) LncBase
- (167) LncBook
- (168) LNCipedia
- (169) LncRNAdb
- (170) Modomics
- (171) PDBe
- (172) Rfam
- (173) SILVA
- (174) snOPY
- (175) SRPDB
- (176) GENCODE
- (177) TarBase
- (178) MyBioSource