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Aliases for RNA5SP49 Gene
Aliases for RNA5SP49 Gene
External Ids for RNA5SP49 Gene
- HGNC: 42825
- NCBI Entrez Gene: 100873288
- Ensembl: ENSG00000252259
Previous HGNC Symbols for RNA5SP49 Gene
- RN5S49
Previous GeneCards Identifiers for RNA5SP49 Gene
- GC01M063655
Summaries for RNA5SP49 Gene
GeneCards Summary for RNA5SP49 Gene
RNA5SP49 (RNA, 5S Ribosomal Pseudogene 49) is a Pseudogene.
Additional gene information for RNA5SP49 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP49 Gene
Genomics for RNA5SP49 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RNA5SP49 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J063185 | Enhancer | 0.2 | Ensembl | 250.7 | +0.9 | 949 | 0.2 | RNA5SP49 RF00994-020 lnc-FOXD3-2 LOC105378770 FOXD3 LINC00466 ATG4C | ||
| GH01J063189 | Enhancer | 0.7 | Ensembl ENCODE | 0.7 | -3.2 | -3151 | 4 | ETS1 CTCF SIN3A RAD21 SMC3 SP1 POU5F1 NANOG POLR2A CEBPB | ITGB3BP RNA5SP49 LOC105378770 lnc-FOXD3-2 RF00017-232 LINC00466 FOXD3 ATG4C | |
| GH01J063199 | Enhancer | 1.1 | VISTA UCNEbase Ensembl | 0.4 | -13.6 | -13631 | 2.2 | SP1 GATA2 POU5F1 NANOG POLR2A EZH2 | RNA5SP49 RF00017-232 lnc-FOXD3-2 LINC00466 FOXD3 ATG4C | |
| GH01J063201 | Enhancer | 0.3 | UCNEbase | 0.4 | -15.0 | -15043 | 0.2 | RNA5SP49 RF00017-232 LINC00466 FOXD3 ATG4C | ||
| GH01J063195 | Enhancer | 0.2 | Ensembl | 0.4 | -9.5 | -9451 | 0.2 | RNA5SP49 LOC105378770 lnc-FOXD3-2 RF00017-232 FOXD3 LINC00466 ATG4C |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RNA5SP49 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for RNA5SP49 Gene
Latest Assembly
- chr1:63,186,336-63,186,450
- (GRCh38/hg38)
- Size:
- 115 bases
- Orientation:
- Minus strand
Previous Assembly
- chr1:63,652,007-63,652,121
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 115 bases
- Orientation:
- Minus strand
- chr1:63,652,007-63,652,121
- (GRCh37/hg19 by Ensembl)
- Size:
- 115 bases
- Orientation:
- Minus strand
Genomic View for RNA5SP49 Gene
Genes around RNA5SP49 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p31.3 by HGNC
- 1p31.3 by Entrez Gene
- 1p31.3 by Ensembl
RNA5SP49 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNA5SP49 Gene
Proteins for RNA5SP49 Gene
Post-translational modifications for RNA5SP49 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP49
- Origene Custom Protein Services for RNA5SP49
Assay products for research
No data available for DME Specific Peptides for RNA5SP49 Gene
Domains & Families for RNA5SP49 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP49 Gene
Function for RNA5SP49 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP49 - Starting at $85 >
- * RNA5SP49 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RNA5SP49
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP49 Gene
Localization for RNA5SP49 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP49 Gene
Transcripts for RNA5SP49 Gene
mRNA/cDNA for RNA5SP49 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000516450 115 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP49 - Starting at $85 >
- * RNA5SP49 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RNA5SP49
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for RNA5SP49 Gene
- GeneLoc Exon Structure for
- RNA5SP49
Expression for RNA5SP49 Gene
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP49 Gene
Orthologs for RNA5SP49 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | 5S_rRNA 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | 5S_rRNA 31 |
|
ManyToMany | |
| Dog (Canis familiaris) |
Mammalia | 5S_rRNA 31 |
|
OneToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | 5S_rRNA 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 |
|
ManyToMany |
|
- Species where no ortholog for RNA5SP49 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for RNA5SP49 Gene
No data available for Paralogs for RNA5SP49 Gene
Variants for RNA5SP49 Gene
Additional Variant Information for RNA5SP49 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNA5SP49
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP49 Gene
Disorders for RNA5SP49 Gene
No disorders were found for RNA5SP49 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP49 Gene
Publications for RNA5SP49 Gene
No publications were found for RNA5SP49 Gene.
No data available for Mastermind for RNA5SP49 Gene
Products for RNA5SP49 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP49
- Origene Custom Protein Services for RNA5SP49
- Browse OriGene Inhibitory RNA Products For RNA5SP49
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNA5SP49
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNA5SP49
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RNA5SP49
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RNA5SP49
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RNA5SP49
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RNA5SP49
Sources for RNA5SP49 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB