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RNA5SP49 Gene(Pseudogene)

RNA, 5S Ribosomal Pseudogene 49

GCID:
GC01M063186
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RNA5SP49 Gene

Subcategory (RNA class) for RNA5SP49 Gene

rRNA

Aliases for RNA5SP49 Gene

  • RNA, 5S Ribosomal Pseudogene 49 2 3 5
  • RNA, 5S Ribosomal 49 2 3
  • RN5S49 3

External Ids for RNA5SP49 Gene

ORGUL Members for RNA5SP49 Gene

Previous HGNC Symbols for RNA5SP49 Gene

  • RN5S49

Previous GeneCards Identifiers for RNA5SP49 Gene

  • GC01M063655

Summaries for RNA5SP49 Gene

GeneCards Summary for RNA5SP49 Gene

RNA5SP49 (RNA, 5S Ribosomal Pseudogene 49) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP49 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP49 Gene

Genomics for RNA5SP49 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNA5SP49 Gene

Promoters and enhancers for RNA5SP49 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I063189 Enhancer 0.5 ENCODE 0.8 -3.4 -3422 1.2 SP1 CTCF POU5F1 SMC3 SIN3A RAD21 ETS1 RNA5SP49 LOC105378770 ENSG00000228734 LINC00466
GH01I063199 Enhancer 0.9 VISTA UCNEbase 0.4 -13.6 -13550 0.9 EZH2 RNA5SP49 ENSG00000228734 LINC00466
GH01I063200 Enhancer 0.4 UCNEbase 0.4 -14.5 -14501 0.5 RNA5SP49 ENSG00000228734 LINC00466
GH01I063201 Enhancer 0.4 UCNEbase 0.4 -15.0 -15043 0.2 RNA5SP49 ENSG00000228734 LINC00466
GH01I063216 Enhancer 0.2 FANTOM5 0.3 -30.0 -29991 0 RNA5SP49 ENSG00000228734 LINC00466
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP49 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP49 Gene

Genomic Locations for RNA5SP49 Gene
chr1:63,186,336-63,186,450
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand
chr1:63,652,007-63,652,121
(GRCh37/hg19)

Genomic View for RNA5SP49 Gene

Genes around RNA5SP49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP49 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNA5SP49 Gene

Proteins for RNA5SP49 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNA5SP49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP49 Gene

Domains & Families for RNA5SP49 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP49 Gene

Function for RNA5SP49 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP49 Gene

Localization for RNA5SP49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP49 Gene

Pathways & Interactions for RNA5SP49 Gene

SuperPathways for RNA5SP49 Gene

PathCards logo More details on SuperPathways for RNA5SP49
No Data Available

Interacting Proteins for RNA5SP49 Gene

Gene Ontology (GO) - Biological Process for RNA5SP49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP49 Gene

Drugs & Compounds for RNA5SP49 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNA5SP49 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNA5SP49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP49 Gene

No ASD Table

Relevant External Links for RNA5SP49 Gene

GeneLoc Exon Structure for
RNA5SP49
ECgene alternative splicing isoforms for
RNA5SP49

Expression for RNA5SP49 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP49 Gene

mRNA expression in normal human tissues for RNA5SP49 Gene
mRNA expression by GTEx for RNA5SP49 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP49 Gene:

RNA5SP49
genes like me logo Genes that share expression patterns with RNA5SP49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP49 Gene

Orthologs for RNA5SP49 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 5S_rRNA 34
  • 99 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia 5S_rRNA 34
  • 61 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia 5S_rRNA 34
  • 60 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia 5S_rRNA 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 52 (a)
 ManyToMany
Species where no ortholog for RNA5SP49 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP49 Gene

ENSEMBL:
Gene Tree for RNA5SP49 (if available)
TreeFam:
Gene Tree for RNA5SP49 (if available)

Paralogs for RNA5SP49 Gene

No data available for Paralogs for RNA5SP49 Gene

Variants for RNA5SP49 Gene

Additional Variant Information for RNA5SP49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP49 Gene

Disorders for RNA5SP49 Gene

No disorders were found for RNA5SP49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP49 Gene

Publications for RNA5SP49 Gene

No publications were found for RNA5SP49 Gene.

Products for RNA5SP49 Gene

Sources for RNA5SP49 Gene

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