Aliases for RNA5SP481 Gene

Aliases for RNA5SP481 Gene

  • RNA, 5S Ribosomal Pseudogene 481 2 3 5
  • RNA, 5S Ribosomal 481 2 3
  • RN5S481 3

External Ids for RNA5SP481 Gene

Previous HGNC Symbols for RNA5SP481 Gene

  • RN5S481

Previous GeneCards Identifiers for RNA5SP481 Gene

  • GC20P030600

Summaries for RNA5SP481 Gene

GeneCards Summary for RNA5SP481 Gene

RNA5SP481 (RNA, 5S Ribosomal Pseudogene 481) is a Pseudogene.

Additional gene information for RNA5SP481 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP481 Gene

Genomics for RNA5SP481 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP481 Gene

Promoters and enhancers for RNA5SP481 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J032006 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 -0.6 -642 2.1 EP300 USF1 ZIC2 ATF2 ZNF341 POLR2A NR2F2 ZBTB17 ZNF263 GABPA RNA5SP481 KIF3B CCM2L COX4I2 lnc-XKR7-1 ENSG00000226239
GH20J031967 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -40.0 -39951 2.4 RXRA ZBTB40 SIN3A TEAD4 REST KDM6A ZBTB10 ZBTB11 AFF1 GABPA ENSG00000278012 PDRG1 XKR7 TTLL9 RSL24D1P6 DUSP15 ASXL1 RNA5SP481 CCM2L FOXS1
GH20J032039 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11 +32.4 32382 1.7 ZNF217 NRF1 SP1 CTBP1 SIN3A ESRRA ELK1 TCF12 ZNF316 ZNF592 lnc-PDRG1-3 CCM2L TM9SF4 RNA5SP481 MYLK2 HCK PLAGL2 NOL4L lnc-PDRG1-2
GH20J031974 Enhancer 1 Ensembl ENCODE dbSUPER 11.5 -33.0 -33039 2.1 USF1 GABPA HDAC2 RBM25 POLR2A YY1 PHF8 TCF12 ZFHX2 BCOR XKR7 RNA5SP481 CCM2L RNU1-94P MYLK2 TM9SF4 TTLL9 ENSG00000278012 lnc-XKR7-1
GH20J031917 Enhancer 1 Ensembl ENCODE 10.5 -89.0 -88957 3.2 PHB2 ZIC2 AFF1 HES1 TOE1 CTBP1 TRIM22 ZNF341 HDAC3 NCOR1 piR-47016 DUSP15 TTLL9 FOXS1 XKR7 MYLK2 RNA5SP481 CCM2L C20orf203 piR-55803
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP481 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP481 Gene

Genomic Locations for RNA5SP481 Gene
chr20:32,008,351-32,008,472
(GRCh38/hg38)
Size:
122 bases
Orientation:
Plus strand
chr20:30,596,154-30,596,275
(GRCh37/hg19)
Size:
122 bases
Orientation:
Plus strand

Genomic View for RNA5SP481 Gene

Genes around RNA5SP481 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP481 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP481 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP481 Gene

Proteins for RNA5SP481 Gene

Post-translational modifications for RNA5SP481 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP481 Gene

Domains & Families for RNA5SP481 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP481 Gene

Function for RNA5SP481 Gene

Phenotypes From GWAS Catalog for RNA5SP481 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP481 Gene

Localization for RNA5SP481 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP481 Gene

Pathways & Interactions for RNA5SP481 Gene

PathCards logo

SuperPathways for RNA5SP481 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNA5SP481 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP481 Gene

Drugs & Compounds for RNA5SP481 Gene

No Compound Related Data Available

Transcripts for RNA5SP481 Gene

mRNA/cDNA for RNA5SP481 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP481 Gene

No ASD Table

Relevant External Links for RNA5SP481 Gene

GeneLoc Exon Structure for
RNA5SP481

Expression for RNA5SP481 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP481 Gene

mRNA differential expression in normal tissues according to GTEx for RNA5SP481 Gene

This gene is overexpressed in Brain - Cerebellum (x27.4) and Brain - Cerebellar Hemisphere (x25.6).
genes like me logo Genes that share expression patterns with RNA5SP481: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP481 Gene

Orthologs for RNA5SP481 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP481 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 67 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 64 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24174 31
  • 60 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 31
  • 51 (a)
ManyToMany
Species where no ortholog for RNA5SP481 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP481 Gene

ENSEMBL:
Gene Tree for RNA5SP481 (if available)
TreeFam:
Gene Tree for RNA5SP481 (if available)

Paralogs for RNA5SP481 Gene

No data available for Paralogs for RNA5SP481 Gene

Variants for RNA5SP481 Gene

Additional Variant Information for RNA5SP481 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP481

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP481 Gene

Disorders for RNA5SP481 Gene

No disorders were found for RNA5SP481 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP481 Gene

Publications for RNA5SP481 Gene

No publications were found for RNA5SP481 Gene.

No data available for Mastermind for RNA5SP481 Gene

Products for RNA5SP481 Gene

Sources for RNA5SP481 Gene