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Aliases for RNA5SP472 Gene

Subcategory (RNA class) for RNA5SP472 Gene

rRNA

Aliases for RNA5SP472 Gene

  • RNA, 5S Ribosomal Pseudogene 472 2 3 5
  • RNA, 5S Ribosomal 472 2 3
  • RN5S472 3

External Ids for RNA5SP472 Gene

ORGUL Members for RNA5SP472 Gene

Previous HGNC Symbols for RNA5SP472 Gene

  • RN5S472

Previous GeneCards Identifiers for RNA5SP472 Gene

  • GC19M032737

Summaries for RNA5SP472 Gene

GeneCards Summary for RNA5SP472 Gene

RNA5SP472 (RNA, 5S Ribosomal Pseudogene 472) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP472 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP472 Gene

Genomics for RNA5SP472 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP472 Gene

Promoters and enhancers for RNA5SP472 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032287 Enhancer 1 Ensembl ENCODE 0.3 -42.6 -42617 6.6 CTCF ZSCAN21 MAFK RFX1 REST ZNF629 ZNF316 ZNF10 ZBTB17 RAD21 ENSG00000267213 GC19M032297 RNA5SP472
GH19J032266 Enhancer 0.4 UCNEbase 0.3 -22.9 -22857 0.2 RNA5SP472 GC19M032297
GH19J032269 Enhancer 0.4 Ensembl 0.3 -26.0 -26018 1.4 USF1 USF2 ZNF507 RNA5SP472 GC19M032297
GH19J032272 Enhancer 0.4 Ensembl 0.3 -29.7 -29718 2.4 MAFK ZNF26 GPATCH1 CEP89 ZNF507 ENSG00000267213 DPY19L3 RNA5SP472 GC19M032297
GH19J032304 Enhancer 0.5 Ensembl 0.2 -62.7 -62718 4.8 RFX1 SCRT1 FOXA1 ZNF146 HLF GC19M032297 ENSG00000267213 ZNF507 RNA5SP472
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP472 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP472 Gene

Genomic Locations for RNA5SP472 Gene
chr19:32,243,965-32,244,083
(GRCh38/hg38)
Size:
119 bases
Orientation:
Minus strand
chr19:32,734,871-32,734,989
(GRCh37/hg19)
Size:
119 bases
Orientation:
Minus strand

Genomic View for RNA5SP472 Gene

Genes around RNA5SP472 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP472 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP472 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP472 Gene

Proteins for RNA5SP472 Gene

Post-translational modifications for RNA5SP472 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP472 Gene

Domains & Families for RNA5SP472 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP472 Gene

Function for RNA5SP472 Gene

Phenotypes From GWAS Catalog for RNA5SP472 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP472 Gene

Localization for RNA5SP472 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP472 Gene

Pathways & Interactions for RNA5SP472 Gene

PathCards logo

SuperPathways for RNA5SP472 Gene

No Data Available

Interacting Proteins for RNA5SP472 Gene

Gene Ontology (GO) - Biological Process for RNA5SP472 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP472 Gene

Drugs & Compounds for RNA5SP472 Gene

No Compound Related Data Available

Transcripts for RNA5SP472 Gene

mRNA/cDNA for RNA5SP472 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP472 Gene

No ASD Table

Relevant External Links for RNA5SP472 Gene

GeneLoc Exon Structure for
RNA5SP472
ECgene alternative splicing isoforms for
RNA5SP472

Expression for RNA5SP472 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP472 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP472 Gene:

RNA5SP472
genes like me logo Genes that share expression patterns with RNA5SP472: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP472 Gene

Orthologs for RNA5SP472 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP472 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 78 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s156 35
  • 74 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 74 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 65 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 64 (a)
ManyToMany
Species where no ortholog for RNA5SP472 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP472 Gene

ENSEMBL:
Gene Tree for RNA5SP472 (if available)
TreeFam:
Gene Tree for RNA5SP472 (if available)

Paralogs for RNA5SP472 Gene

No data available for Paralogs for RNA5SP472 Gene

Variants for RNA5SP472 Gene

Additional Variant Information for RNA5SP472 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP472

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP472 Gene

Disorders for RNA5SP472 Gene

No disorders were found for RNA5SP472 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP472 Gene

Publications for RNA5SP472 Gene

No publications were found for RNA5SP472 Gene.

No data available for External Links for RNA5SP472 Gene

Products for RNA5SP472 Gene

Sources for RNA5SP472 Gene

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