Aliases for RNA5SP468 Gene

Aliases for RNA5SP468 Gene

  • RNA, 5S Ribosomal Pseudogene 468 2 3 5
  • RNA, 5S Ribosomal 468 2 3
  • RN5S468 3

External Ids for RNA5SP468 Gene

Previous HGNC Symbols for RNA5SP468 Gene

  • RN5S468

Previous GeneCards Identifiers for RNA5SP468 Gene

  • GC19P018084
  • GC19P018184
  • GC19P017987
  • GC19P018183
  • GC19P020489
  • GC19P020630
  • GC19P018302
  • GC19P018334
  • GC19P018707
  • GC19P019016
  • GC19P019335
  • GC19P019670
  • GC19P020032
  • GC19P020346

Summaries for RNA5SP468 Gene

GeneCards Summary for RNA5SP468 Gene

RNA5SP468 (RNA, 5S Ribosomal Pseudogene 468) is a Pseudogene.

Additional gene information for RNA5SP468 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP468 Gene

Genomics for RNA5SP468 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP468 Gene

Promoters and enhancers for RNA5SP468 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J017966 Promoter/Enhancer 1.6 EPDnew Ensembl CraniofacialAtlas 0.6 -4.6 -4629 1.6 ZIC2 ZBTB8A PATZ1 SP2 ZBTB10 ZNF423 ZFP91 VEZF1 GLIS1 ZNF398 KCNN1 RNA5SP468 lnc-CCDC124-1 L13712-014 RF00017-2890
GH19J017996 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +28.2 28222 6.7 GTF3C2 ZNF24 CTCF ZBTB6 MLX RBPJ SMARCE1 POLR2A HCFC1 MYC ARRDC2 lnc-IL12RB1-4 MVB12A ENSG00000268938 ENSG00000268030 UPF1 COLGALT1 HAUS8 GTPBP3 PLVAP
GH19J017953 Promoter 0.9 Ensembl 0.4 -19.7 -19724 1 ZNF148 NKRF ZNF687 PRDM1 RELA IKZF1 GLIS2 ZIC2 PRDM10 PATZ1 KCNN1 lnc-CCDC124-1 CCDC124 RNA5SP468 L13712-014 RF00017-2890
GH19J017976 Enhancer 0.5 Ensembl 0.4 +5.4 5376 0.8 NFIC HIC1 KDM1A ATF2 CBFA2T3 RNA5SP468 lnc-IL12RB1-4 KCNN1 L13712-014 RF00017-2890
GH19J017965 Enhancer 0.4 ENCODE 0.4 -6.1 -6108 0.1 ZNF366 ZNF335 GLIS1 ZNF398 RNA5SP468 lnc-CCDC124-1 KCNN1 L13712-014 RF00017-2890
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP468 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP468 Gene

Genomic Locations for RNA5SP468 Gene
chr19:17,972,025-17,972,117
(GRCh38/hg38)
Size:
93 bases
Orientation:
Plus strand
chr19:18,082,834-18,082,926
(GRCh37/hg19)
Size:
93 bases
Orientation:
Plus strand

Genomic View for RNA5SP468 Gene

Genes around RNA5SP468 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP468 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP468 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP468 Gene

Proteins for RNA5SP468 Gene

Post-translational modifications for RNA5SP468 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP468 Gene

Domains & Families for RNA5SP468 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP468 Gene

Function for RNA5SP468 Gene

Phenotypes From GWAS Catalog for RNA5SP468 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP468 Gene

Localization for RNA5SP468 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP468 Gene

Pathways & Interactions for RNA5SP468 Gene

PathCards logo

SuperPathways for RNA5SP468 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP468 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP468 Gene

Drugs & Compounds for RNA5SP468 Gene

No Compound Related Data Available

Transcripts for RNA5SP468 Gene

mRNA/cDNA for RNA5SP468 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP468 Gene

No ASD Table

Relevant External Links for RNA5SP468 Gene

GeneLoc Exon Structure for
RNA5SP468
ECgene alternative splicing isoforms for
RNA5SP468

Expression for RNA5SP468 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP468 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP468 Gene:

RNA5SP468
genes like me logo Genes that share expression patterns with RNA5SP468: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP468 Gene

Orthologs for RNA5SP468 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP468 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 33
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 33
  • 82 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 33
  • 82 (a)
OneToOne
Species where no ortholog for RNA5SP468 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP468 Gene

ENSEMBL:
Gene Tree for RNA5SP468 (if available)
TreeFam:
Gene Tree for RNA5SP468 (if available)

Paralogs for RNA5SP468 Gene

No data available for Paralogs for RNA5SP468 Gene

Variants for RNA5SP468 Gene

Additional Variant Information for RNA5SP468 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP468

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP468 Gene

Disorders for RNA5SP468 Gene

No disorders were found for RNA5SP468 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP468 Gene

Publications for RNA5SP468 Gene

No publications were found for RNA5SP468 Gene.

No data available for External Links for RNA5SP468 Gene

Products for RNA5SP468 Gene

Sources for RNA5SP468 Gene