Aliases for RNA5SP433 Gene

Aliases for RNA5SP433 Gene

  • RNA, 5S Ribosomal Pseudogene 433 2 3 5
  • RNA, 5S Ribosomal 433 2 3
  • RNA5SP433 5
  • RN5S433 3

External Ids for RNA5SP433 Gene

Previous HGNC Symbols for RNA5SP433 Gene

  • RN5S433

Summaries for RNA5SP433 Gene

GeneCards Summary for RNA5SP433 Gene

RNA5SP433 (RNA, 5S Ribosomal Pseudogene 433) is a Pseudogene.

Additional gene information for RNA5SP433 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP433 Gene

Genomics for RNA5SP433 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP433 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084266 Enhancer 1 Ensembl ENCODE 0.7 -3.7 -3713 0.7 SP1 CREB1 TFE3 SIX5 FOS ZNF143 PKNOX1 RXRB REST NR2C1 WFDC1 KCNG4 NECAB2 RF00001-139 RNA5SP433
GH16J084283 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 -21.5 -21470 2.4 CEBPG RXRB SP1 CEBPA CEBPB NR2F2 SMAD4 RXRA KLF1 RARA WFDC1 RF00001-139 RNA5SP433 KCNG4
GH16J084285 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -24.0 -24042 2.5 SP1 ZKSCAN1 NR2F2 POLR2A RXRA ZNF24 WFDC1 RF00001-139 RNA5SP433 KCNG4
GH16J084281 Enhancer 0.8 FANTOM5 ENCODE 0.4 -18.3 -18333 0.2 SP1 DDX20 PKNOX1 PBX2 CEBPB SP2 MBD2 NFYA NFYB FOS ADAD2 DNAAF1 WFDC1 RNA5SP433 RF00001-139 KCNG4
GH16J084277 Enhancer 0.7 Ensembl 0.4 -14.5 -14521 0.5 CTCF JUND ZNF143 REST RAD21 IRF2 TRIM22 HMBOX1 SMARCA5 ZNF444 ENSG00000261471 RNA5SP433 RF00001-139 WFDC1 KCNG4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP433 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP433 Gene

Genomic Locations for RNA5SP433 Gene
chr16:84,262,815-84,262,928
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand
chr16:84,296,421-84,296,534
(GRCh37/hg19)
Size:
114 bases
Orientation:
Minus strand

Genomic View for RNA5SP433 Gene

Genes around RNA5SP433 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP433 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP433 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP433 Gene

Proteins for RNA5SP433 Gene

Post-translational modifications for RNA5SP433 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP433 Gene

Domains & Families for RNA5SP433 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP433 Gene

Function for RNA5SP433 Gene

Phenotypes From GWAS Catalog for RNA5SP433 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP433 Gene

Localization for RNA5SP433 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP433 Gene

Pathways & Interactions for RNA5SP433 Gene

PathCards logo

SuperPathways for RNA5SP433 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP433 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP433 Gene

Drugs & Compounds for RNA5SP433 Gene

No Compound Related Data Available

Transcripts for RNA5SP433 Gene

mRNA/cDNA for RNA5SP433 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP433 Gene

No ASD Table

Relevant External Links for RNA5SP433 Gene

GeneLoc Exon Structure for
RNA5SP433

Expression for RNA5SP433 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP433 Gene

genes like me logo Genes that share expression patterns with RNA5SP433: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP433 Gene

Orthologs for RNA5SP433 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP433 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 66 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm22687 31
  • 61 (a)
OneToMany
Species where no ortholog for RNA5SP433 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP433 Gene

ENSEMBL:
Gene Tree for RNA5SP433 (if available)
TreeFam:
Gene Tree for RNA5SP433 (if available)

Paralogs for RNA5SP433 Gene

No data available for Paralogs for RNA5SP433 Gene

Variants for RNA5SP433 Gene

Additional Variant Information for RNA5SP433 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP433

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP433 Gene

Disorders for RNA5SP433 Gene

No disorders were found for RNA5SP433 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP433 Gene

Publications for RNA5SP433 Gene

No publications were found for RNA5SP433 Gene.

No data available for Mastermind for RNA5SP433 Gene

Products for RNA5SP433 Gene

Sources for RNA5SP433 Gene