Aliases for RNA5SP432 Gene

Aliases for RNA5SP432 Gene

  • RNA, 5S Ribosomal Pseudogene 432 2 3 5
  • RNA, 5S Ribosomal 432 2 3
  • RNA5SP432 5
  • RN5S432 3

External Ids for RNA5SP432 Gene

Previous HGNC Symbols for RNA5SP432 Gene

  • RN5S432

Previous GeneCards Identifiers for RNA5SP432 Gene

  • GC16M084075

Summaries for RNA5SP432 Gene

GeneCards Summary for RNA5SP432 Gene

RNA5SP432 (RNA, 5S Ribosomal Pseudogene 432) is a Pseudogene.

Additional gene information for RNA5SP432 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP432 Gene

Genomics for RNA5SP432 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP432 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084040 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 250.7 -0.9 -865 1.2 BHLHE40 NFIB CREB1 RFX1 ENSG00000285792 RF00001-138 RNA5SP432 SLC38A8 MBTPS1 NECAB2
GH16J083952 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +86.0 86017 3.2 TBP MXD4 FEZF1 CEBPA MNT IKZF1 HES1 ZFP64 MBD2 ZNF217 OSGIN1 TAF1C ENSG00000261243 KLHL36 RNA5SP432 SLC38A8 MLYCD DNAAF1 HSDL1 MBTPS1
GH16J083995 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.6 +44.2 44237 0.8 SIN3A DDX20 NFYC RFX1 SP1 ZNF768 RFX5 ZXDB MYNN BMI1 NECAB2 DNAAF1 RNA5SP432 SLC38A8 HSDL1 ADAD2 HSALNG0113090
GH16J084062 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.3 -23.1 -23056 0.6 IKZF1 CTCF REST VEZF1 SMC3 RAD21 JUND FOSL1 MBD1 MAZ lnc-SLC38A8-7 RNA5SP432 MBTPS1 NECAB2 OSGIN1 TAF1C HSDL1 DNAAF1 MLYCD SLC38A8
GH16J084013 Enhancer 1 Ensembl ENCODE 12.2 +25.7 25661 1.7 MNT IKZF1 BHLHE40 HOMEZ CEBPB REST ZNF740 MAX RUNX1 SAP130 RNA5SP432 SLC38A8 DNAAF1 HSDL1 HSALNG0113091 HSALNG0113090 NECAB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP432 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP432 Gene

Latest Assembly
chr16:84,039,918-84,040,033
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Previous Assembly
chr16:84,073,523-84,073,638
(GRCh37/hg19 by Entrez Gene)
Size:
116 bases
Orientation:
Minus strand

chr16:84,073,523-84,073,638
(GRCh37/hg19 by Ensembl)
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNA5SP432 Gene

Genes around RNA5SP432 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP432 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP432 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP432 Gene

Proteins for RNA5SP432 Gene

Post-translational modifications for RNA5SP432 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP432 Gene

Domains & Families for RNA5SP432 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP432 Gene

Function for RNA5SP432 Gene

Phenotypes From GWAS Catalog for RNA5SP432 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP432 Gene

Localization for RNA5SP432 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP432 Gene

Pathways & Interactions for RNA5SP432 Gene

PathCards logo

SuperPathways for RNA5SP432 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP432 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP432 Gene

Drugs & Compounds for RNA5SP432 Gene

No Compound Related Data Available

Transcripts for RNA5SP432 Gene

mRNA/cDNA for RNA5SP432 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP432 Gene

No ASD Table

Relevant External Links for RNA5SP432 Gene

GeneLoc Exon Structure for
RNA5SP432

Expression for RNA5SP432 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP432 Gene

genes like me logo Genes that share expression patterns with RNA5SP432: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP432 Gene

Orthologs for RNA5SP432 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP432 Gene

Organism Taxonomy Gene Similarity Type Details
Cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 67 (a)
ManyToMany
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 62 (a)
ManyToMany
Species where no ortholog for RNA5SP432 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP432 Gene

ENSEMBL:
Gene Tree for RNA5SP432 (if available)
TreeFam:
Gene Tree for RNA5SP432 (if available)

Paralogs for RNA5SP432 Gene

No data available for Paralogs for RNA5SP432 Gene

Variants for RNA5SP432 Gene

Additional Variant Information for RNA5SP432 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP432

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP432 Gene

Disorders for RNA5SP432 Gene

No disorders were found for RNA5SP432 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP432 Gene

Publications for RNA5SP432 Gene

No publications were found for RNA5SP432 Gene.

Products for RNA5SP432 Gene

Sources for RNA5SP432 Gene