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Aliases for RNA5SP428 Gene

Subcategory (RNA class) for RNA5SP428 Gene

rRNA

Aliases for RNA5SP428 Gene

  • RNA, 5S Ribosomal Pseudogene 428 2 3 5
  • RNA, 5S Ribosomal 428 2 3
  • RN5S428 3

External Ids for RNA5SP428 Gene

ORGUL Members for RNA5SP428 Gene

Previous HGNC Symbols for RNA5SP428 Gene

  • RN5S428

Summaries for RNA5SP428 Gene

GeneCards Summary for RNA5SP428 Gene

RNA5SP428 (RNA, 5S Ribosomal Pseudogene 428) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP428 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP428 Gene

Genomics for RNA5SP428 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP428 Gene

Promoters and enhancers for RNA5SP428 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I066357 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +61.9 61879 12.6 RAD21 ZNF121 ZNF23 ZNF143 ATF7 FOS MIXL1 EGR2 ZNF654 NR2F2 CDH5 PIR36503 KIAA0895L NAE1 LINC00920 HSF4 LRRC36 LOC105371318 RNA5SP428
GH16I066314 Enhancer 0.8 ENCODE 0.4 +13.5 13490 0.9 ELF3 RB1 MZF1 BATF IRF4 RAD21 RARA YY1 ZNF143 IKZF2 RNA5SP428 PIR36503
GH16I066324 Enhancer 0.9 ENCODE 0.3 +24.9 24918 4.2 ATF1 FOXA2 MLX ZFP64 ARID4B TCF12 ATF7 MIER2 PPARG KAT8 LINC00920 RNA5SP428 PIR36503
GH16I066335 Enhancer 0.7 ENCODE 0.3 +34.0 34039 1 KLF1 ZBTB21 ZNF664 ZFHX2 GLIS2 PATZ1 PRDM10 EGR2 MAZ ZEB2 PIR36503 RNA5SP428
GH16I066344 Enhancer 0.4 ENCODE 0.3 +43.1 43134 0.1 CTCF TRIM22 BEAN1 PIR36503 RNA5SP428
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP428 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP428 Gene

Genomic Locations for RNA5SP428 Gene
chr16:66,301,809-66,301,940
(GRCh38/hg38)
Size:
132 bases
Orientation:
Plus strand
chr16:66,335,712-66,335,843
(GRCh37/hg19)

Genomic View for RNA5SP428 Gene

Genes around RNA5SP428 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP428 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP428 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP428 Gene

Proteins for RNA5SP428 Gene

Post-translational modifications for RNA5SP428 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP428 Gene

Domains & Families for RNA5SP428 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP428 Gene

Function for RNA5SP428 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP428 Gene

Localization for RNA5SP428 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP428 Gene

Pathways & Interactions for RNA5SP428 Gene

SuperPathways for RNA5SP428 Gene

No Data Available

Interacting Proteins for RNA5SP428 Gene

Gene Ontology (GO) - Biological Process for RNA5SP428 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP428 Gene

Drugs & Compounds for RNA5SP428 Gene

No Compound Related Data Available

Transcripts for RNA5SP428 Gene

mRNA/cDNA for RNA5SP428 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP428 Gene

No ASD Table

Relevant External Links for RNA5SP428 Gene

GeneLoc Exon Structure for
RNA5SP428
ECgene alternative splicing isoforms for
RNA5SP428

Expression for RNA5SP428 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP428 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP428 Gene:

RNA5SP428
genes like me logo Genes that share expression patterns with RNA5SP428: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP428 Gene

Orthologs for RNA5SP428 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP428 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 77 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 65 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 58 (a)
OneToMany
Species where no ortholog for RNA5SP428 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP428 Gene

ENSEMBL:
Gene Tree for RNA5SP428 (if available)
TreeFam:
Gene Tree for RNA5SP428 (if available)

Paralogs for RNA5SP428 Gene

No data available for Paralogs for RNA5SP428 Gene

Variants for RNA5SP428 Gene

Additional Variant Information for RNA5SP428 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP428

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP428 Gene

Disorders for RNA5SP428 Gene

No disorders were found for RNA5SP428 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP428 Gene

Publications for RNA5SP428 Gene

No publications were found for RNA5SP428 Gene.

Products for RNA5SP428 Gene

Sources for RNA5SP428 Gene

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