RNA5SP404 Gene (Pseudogene)

RNA, 5S Ribosomal Pseudogene 404

GC16P009600
GIFtS:
6
See more...

Aliases for RNA5SP404 Gene

Aliases for RNA5SP404 Gene

  • RNA, 5S Ribosomal Pseudogene 404 2 3 5
  • RNA, 5S Ribosomal 404 2 3
  • RNA5SP404 5
  • RN5S404 3

External Ids for RNA5SP404 Gene

Previous HGNC Symbols for RNA5SP404 Gene

  • RN5S404

Previous GeneCards Identifiers for RNA5SP404 Gene

  • GC16P009696

Summaries for RNA5SP404 Gene

GeneCards Summary for RNA5SP404 Gene

RNA5SP404 (RNA, 5S Ribosomal Pseudogene 404) is a Pseudogene.

Additional gene information for RNA5SP404 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP404 Gene

Genomics for RNA5SP404 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNA5SP404 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009598 Enhancer 0.9 ENCODE 250.7 -1.6 -1638 0.2 TBP IKZF1 HES1 MBD2 ARNT ZNF395 GTF2E2 HCFC1 VEZF1 NBN lnc-C16orf72-13 RNA5SP404 USP7 ENSG00000283003 LOC101927026 GRIN2A C16orf72
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP404 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP404 Gene

Latest Assembly
chr16:9,600,097-9,600,228
(GRCh38/hg38)
Size:
132 bases
Orientation:
Plus strand

Previous Assembly
chr16:9,693,954-9,694,085
(GRCh37/hg19 by Entrez Gene)
Size:
132 bases
Orientation:
Plus strand

chr16:9,693,954-9,694,085
(GRCh37/hg19 by Ensembl)
Size:
132 bases
Orientation:
Plus strand

Genomic View for RNA5SP404 Gene

Genes around RNA5SP404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP404 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNA5SP404 Gene

Proteins for RNA5SP404 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RNA5SP404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP404 Gene

Domains & Families for RNA5SP404 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP404 Gene

Function for RNA5SP404 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP404 Gene

Localization for RNA5SP404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP404 Gene

Pathways & Interactions for RNA5SP404 Gene

PathCards logo

SuperPathways for RNA5SP404 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP404 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP404 Gene

Drugs & Compounds for RNA5SP404 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RNA5SP404 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for RNA5SP404 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP404 Gene

No ASD Table

Relevant External Links for RNA5SP404 Gene

GeneLoc Exon Structure for
RNA5SP404

Expression for RNA5SP404 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP404 Gene

mRNA expression in normal human tissues for RNA5SP404 Gene
mRNA expression by GTEx for RNA5SP404 Gene
genes like me logo Genes that share expression patterns with RNA5SP404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP404 Gene

Orthologs for RNA5SP404 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP404 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
 Mammalia 5S_rRNA 31
  • 72 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia 5S_rRNA 31
  • 65 (a)
 ManyToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia 5S_rRNA 31
  • 63 (a)
 ManyToMany
Chimpanzee
(Pan troglodytes)
 Mammalia 5S_rRNA 31
  • 56 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia 5S_rRNA 31
  • 53 (a)
 ManyToMany
Species where no ortholog for RNA5SP404 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP404 Gene

ENSEMBL:
Gene Tree for RNA5SP404 (if available)
TreeFam:
Gene Tree for RNA5SP404 (if available)

Paralogs for RNA5SP404 Gene

No data available for Paralogs for RNA5SP404 Gene

Variants for RNA5SP404 Gene

Additional Variant Information for RNA5SP404 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP404

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP404 Gene

Disorders for RNA5SP404 Gene

No disorders were found for RNA5SP404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP404 Gene

Publications for RNA5SP404 Gene

No publications were found for RNA5SP404 Gene.

No data available for Mastermind for RNA5SP404 Gene

Products for RNA5SP404 Gene

Sources for RNA5SP404 Gene