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Aliases for RNA5SP383 Gene

Subcategory (RNA class) for RNA5SP383 Gene

rRNA

Aliases for RNA5SP383 Gene

  • RNA, 5S Ribosomal Pseudogene 383 2 3 5
  • RNA, 5S Ribosomal 383 2 3
  • RN5S383 3

External Ids for RNA5SP383 Gene

ORGUL Members for RNA5SP383 Gene

Previous HGNC Symbols for RNA5SP383 Gene

  • RN5S383

Previous GeneCards Identifiers for RNA5SP383 Gene

  • GC14P024629
  • GC14P024631

Summaries for RNA5SP383 Gene

GeneCards Summary for RNA5SP383 Gene

RNA5SP383 (RNA, 5S Ribosomal Pseudogene 383) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP383 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP383 Gene

Genomics for RNA5SP383 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP383 Gene

Promoters and enhancers for RNA5SP383 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I023297 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 46.6 -857.9 -857903 5.5 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 BCL2L2 HOMEZ PIR57322 PPP1R3E ACIN1 RNA5SP383 RNF31 LOC102724814 ENSG00000259321 RBM23
GH14I023953 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.7 -204.5 -204499 2 HDGF SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 DHRS4 ACIN1 SDR39U1 NGDN RNA5SP383 RNF31 KHNYN TSSK4 DHRS4-AS1 PABPN1
GH14I024091 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 31.8 -65.0 -64956 6.5 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 ZNF548 SP3 PCK2 RNA5SP383 NGDN ACIN1 NYNRIN NFATC4 KHNYN IPO4 SLC7A8 TINF2
GH14I024187 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 43.2 +29.7 29707 2.6 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 IPO4 NGDN RNA5SP383 KHNYN RNF31 NFATC4 LOC102724814 ENSG00000259321 SDR39U1 SLC22A17
GH14I023566 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 33.6 -590.3 -590280 3.7 HDGF PKNOX1 FOXA2 SMAD1 ARNT MLX ZFP64 ARID4B NEUROD1 SIN3A AP1G2 KHNYN RNA5SP383 ACIN1 NGDN TM9SF1 MMP14 TINF2 PRMT5 C14orf93
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP383 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP383 Gene

Genomic Locations for RNA5SP383 Gene
chr14:24,158,603-24,158,722
(GRCh38/hg38)
Size:
120 bases
Orientation:
Plus strand
chr14:24,627,812-24,627,931
(GRCh37/hg19)

Genomic View for RNA5SP383 Gene

Genes around RNA5SP383 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP383 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP383 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP383 Gene

Proteins for RNA5SP383 Gene

Post-translational modifications for RNA5SP383 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP383 Gene

Domains & Families for RNA5SP383 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP383 Gene

Function for RNA5SP383 Gene

Phenotypes From GWAS Catalog for RNA5SP383 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP383 Gene

Localization for RNA5SP383 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP383 Gene

Pathways & Interactions for RNA5SP383 Gene

SuperPathways for RNA5SP383 Gene

No Data Available

Interacting Proteins for RNA5SP383 Gene

Gene Ontology (GO) - Biological Process for RNA5SP383 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP383 Gene

Drugs & Compounds for RNA5SP383 Gene

No Compound Related Data Available

Transcripts for RNA5SP383 Gene

mRNA/cDNA for RNA5SP383 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP383 Gene

No ASD Table

Relevant External Links for RNA5SP383 Gene

GeneLoc Exon Structure for
RNA5SP383
ECgene alternative splicing isoforms for
RNA5SP383

Expression for RNA5SP383 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP383 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP383 Gene:

RNA5SP383
genes like me logo Genes that share expression patterns with RNA5SP383: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP383 Gene

Orthologs for RNA5SP383 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP383 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 83 (a)
ManyToMany
Species where no ortholog for RNA5SP383 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP383 Gene

ENSEMBL:
Gene Tree for RNA5SP383 (if available)
TreeFam:
Gene Tree for RNA5SP383 (if available)

Paralogs for RNA5SP383 Gene

No data available for Paralogs for RNA5SP383 Gene

Variants for RNA5SP383 Gene

Additional Variant Information for RNA5SP383 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP383

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP383 Gene

Disorders for RNA5SP383 Gene

No disorders were found for RNA5SP383 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP383 Gene

Publications for RNA5SP383 Gene

No publications were found for RNA5SP383 Gene.

Products for RNA5SP383 Gene

Sources for RNA5SP383 Gene

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