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Aliases for RNA5SP355 Gene
Aliases for RNA5SP355 Gene
External Ids for RNA5SP355 Gene
- HGNC: 43255
- Entrez Gene: 106479009
- Ensembl: ENSG00000202187
Previous HGNC Symbols for RNA5SP355 Gene
- RN5S355
Previous GeneCards Identifiers for RNA5SP355 Gene
- GC12P028660
Summaries for RNA5SP355 Gene
GeneCards Summary for RNA5SP355 Gene
RNA5SP355 (RNA, 5S Ribosomal Pseudogene 355) is a Pseudogene.
Additional gene information for RNA5SP355 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP355 Gene
Genomics for RNA5SP355 Gene
GeneHancer (GH) Regulatory Elements for RNA5SP355 Gene
Promoters and enhancers for RNA5SP355 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J028506 | Enhancer | 0.4 | Ensembl ENCODE | 750.6 | +1.6 | 1550 | 2.3 | USF1 | MF281437-018 RF00001-077 RNA5SP355 CCDC91 ENSG00000244712 | |
| GH12J028542 | Enhancer | 0.7 | ENCODE | 0.3 | +38.0 | 38045 | 1.2 | L3MBTL2 ZKSCAN8 ZNF148 CBFA2T2 MLLT1 SMARCA4 TRIM24 DPF2 IKZF1 TRIM22 | CCDC91 ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 | |
| GH12J028550 | Enhancer | 0.8 | Ensembl ENCODE | 0.2 | +45.7 | 45696 | 1.6 | MAFK POLR2A PKNOX1 ZNF316 NFE2 FOS FOSL2 JUN JUND KDM1A | ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 CCDC91 | |
| GH12J028534 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +30.3 | 30326 | 2.2 | CEBPB EP300 JUND | CCDC91 ENSG00000244712 MF281437-018 RNA5SP355 RF00001-077 | |
| GH12J028539 | Enhancer | 0.6 | Ensembl | 0.3 | +34.9 | 34907 | 1 | TEAD4 CEBPB JUN JUND SOX6 ZNF766 FOXA2 CEBPG TCF12 CBFA2T3 | CCDC91 ENSG00000244712 MF281437-018 RNA5SP355 RF00001-077 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RNA5SP355 on UCSC Golden Path with GeneCards custom track
Genomic Locations for RNA5SP355 Gene
Genomic Locations for RNA5SP355 Gene
- chr12:28,505,394-28,505,528
- (GRCh38/hg38)
- Size:
- 135 bases
- Orientation:
- Plus strand
- chr12:28,658,327-28,658,461
- (GRCh37/hg19)
- Size:
- 135 bases
- Orientation:
- Plus strand
Genomic View for RNA5SP355 Gene
Genes around RNA5SP355 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p11.22 by HGNC
- 12p11.22 by Entrez Gene
- 12p11.22 by Ensembl
RNA5SP355 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNA5SP355 Gene
Proteins for RNA5SP355 Gene
Post-translational modifications for RNA5SP355 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP355
- Origene Custom Protein Services for RNA5SP355
No data available for DME Specific Peptides for RNA5SP355 Gene
Domains & Families for RNA5SP355 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP355 Gene
Function for RNA5SP355 Gene
Phenotypes From GWAS Catalog for RNA5SP355 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for RNA5SP355
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP355 - Select products 50% OFF >
- * RNA5SP355 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * RNA5SP355 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP355 Gene
Localization for RNA5SP355 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP355 Gene
Transcripts for RNA5SP355 Gene
mRNA/cDNA for RNA5SP355 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000365317 135 bps (ENST00000365317.1)
CRISPR Products
- Browse CRISPR knockouts for RNA5SP355
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP355 - Select products 50% OFF >
- * RNA5SP355 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * RNA5SP355 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for RNA5SP355 Gene
NURSA nuclear receptor signaling pathways regulating expression of RNA5SP355 Gene:
RNA5SP355
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP355 Gene
Orthologs for RNA5SP355 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | 5S_rRNA 33 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | n-R5s196 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | 5S_rRNA 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | 5S_rRNA 33 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | 5S_rRNA 33 |
|
OneToMany |
- Species where no ortholog for RNA5SP355 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RNA5SP355 Gene
No data available for Paralogs for RNA5SP355 Gene
Variants for RNA5SP355 Gene
Additional Variant Information for RNA5SP355 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNA5SP355
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP355 Gene
Disorders for RNA5SP355 Gene
No disorders were found for RNA5SP355 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP355 Gene
Publications for RNA5SP355 Gene
No publications were found for RNA5SP355 Gene.
No data available for External Links for RNA5SP355 Gene
Products for RNA5SP355 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP355
- Origene Custom Protein Services for RNA5SP355
- Browse OriGene Inhibitory RNA Products For RNA5SP355
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNA5SP355
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNA5SP355
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RNA5SP355
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RNA5SP355
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RNA5SP355
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RNA5SP355
Sources for RNA5SP355 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource