Aliases for RNA5SP355 Gene

Aliases for RNA5SP355 Gene

  • RNA, 5S Ribosomal Pseudogene 355 2 3 5
  • RNA, 5S Ribosomal 355 2 3
  • RNA5SP355 5
  • RN5S355 3

External Ids for RNA5SP355 Gene

Previous HGNC Symbols for RNA5SP355 Gene

  • RN5S355

Previous GeneCards Identifiers for RNA5SP355 Gene

  • GC12P028660

Summaries for RNA5SP355 Gene

GeneCards Summary for RNA5SP355 Gene

RNA5SP355 (RNA, 5S Ribosomal Pseudogene 355) is a Pseudogene.

Additional gene information for RNA5SP355 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP355 Gene

Genomics for RNA5SP355 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP355 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J028506 Enhancer 0.4 Ensembl ENCODE 250.7 +1.7 1650 2.1 USF1 MF281437-018 RF00001-077 RNA5SP355 CCDC91 HSALNG0090065 ENSG00000244712 FAR2
GH12J028542 Enhancer 0.8 ENCODE 0.3 +38.0 38045 1.2 IRF2 TRIM22 TAL1 FOXK2 TFDP1 TCF12 EP400 MAFG TAF7 CEBPG CCDC91 ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 HSALNG0090065 FAR2
GH12J028550 Enhancer 0.8 Ensembl ENCODE 0.3 +45.7 45696 1.6 ZNF316 JUND NFE2 MAFK BHLHE40 POLR2A KDM1A NFE2L2 PKNOX1 EP300 ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 CCDC91 FAR2
GH12J028539 Enhancer 0.6 Ensembl 0.3 +34.8 34806 0.8 CEBPB FOXA2 TAL1 TCF12 CEBPG TEAD4 ATF4 ARID1B ATF3 SOX6 CCDC91 ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 HSALNG0090065 FAR2
GH12J028534 Enhancer 0.6 Ensembl ENCODE 0.3 +30.4 30425 2 CEBPB EP300 JUND CCDC91 ENSG00000244712 MF281437-018 RF00001-077 RNA5SP355 HSALNG0090065 FAR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP355 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP355 Gene

Latest Assembly
chr12:28,505,394-28,505,528
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand

Previous Assembly
chr12:28,658,327-28,658,416
(GRCh37/hg19 by Entrez Gene)
Size:
90 bases
Orientation:
Plus strand

chr12:28,658,327-28,658,461
(GRCh37/hg19 by Ensembl)
Size:
135 bases
Orientation:
Plus strand

Genomic View for RNA5SP355 Gene

Genes around RNA5SP355 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP355 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP355 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP355 Gene

Proteins for RNA5SP355 Gene

Post-translational modifications for RNA5SP355 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP355 Gene

Domains & Families for RNA5SP355 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP355 Gene

Function for RNA5SP355 Gene

Phenotypes From GWAS Catalog for RNA5SP355 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP355 Gene

Localization for RNA5SP355 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP355 Gene

Pathways & Interactions for RNA5SP355 Gene

PathCards logo

SuperPathways for RNA5SP355 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP355 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP355 Gene

Drugs & Compounds for RNA5SP355 Gene

No Compound Related Data Available

Transcripts for RNA5SP355 Gene

mRNA/cDNA for RNA5SP355 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP355 Gene

No ASD Table

Relevant External Links for RNA5SP355 Gene

GeneLoc Exon Structure for
RNA5SP355

Expression for RNA5SP355 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP355 Gene

genes like me logo Genes that share expression patterns with RNA5SP355: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP355 Gene

Orthologs for RNA5SP355 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP355 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia n-R5s196 31
  • 79 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 77 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 76 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 31
  • 72 (a)
OneToMany
Species where no ortholog for RNA5SP355 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP355 Gene

ENSEMBL:
Gene Tree for RNA5SP355 (if available)
TreeFam:
Gene Tree for RNA5SP355 (if available)

Paralogs for RNA5SP355 Gene

No data available for Paralogs for RNA5SP355 Gene

Variants for RNA5SP355 Gene

Additional Variant Information for RNA5SP355 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP355

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP355 Gene

Disorders for RNA5SP355 Gene

No disorders were found for RNA5SP355 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP355 Gene

Publications for RNA5SP355 Gene

No publications were found for RNA5SP355 Gene.

No data available for Mastermind for RNA5SP355 Gene

Products for RNA5SP355 Gene

Sources for RNA5SP355 Gene