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RNA5SP345 Gene(Pseudogene)

RNA, 5S Ribosomal Pseudogene 345

GCID:
GC11M095840
GIFtS:
10
Genes Participants
UDN Logo

Aliases for RNA5SP345 Gene

Aliases for RNA5SP345 Gene

  • RNA, 5S Ribosomal Pseudogene 345 2 3 5
  • RNA, 5S Ribosomal 345 2 3
  • RN5S345 3

External Ids for RNA5SP345 Gene

Previous HGNC Symbols for RNA5SP345 Gene

  • RN5S345

Previous GeneCards Identifiers for RNA5SP345 Gene

  • GC11M095576

Summaries for RNA5SP345 Gene

GeneCards Summary for RNA5SP345 Gene

RNA5SP345 (RNA, 5S Ribosomal Pseudogene 345) is a Pseudogene.

Additional gene information for RNA5SP345 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP345 Gene

Genomics for RNA5SP345 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNA5SP345 Gene

Promoters and enhancers for RNA5SP345 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I095835 Enhancer 1 ENCODE dbSUPER 0.8 +4.0 4043 1.6 RAD21 RFX5 CHAMP1 ZNF766 ZNF143 RUNX3 MIXL1 DEK ZNF654 CEBPB CEP57 LOC101929295 MTMR2 RNA5SP345 GC11M095816
GH11I095848 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.4 -9381 1.2 CTCF ZNF654 TRIM22 REST RAD21 CC2D1A FOSL1 JUND HMBOX1 SMC3 CEP57 RNA5SP345 GC11M095879 MTMR2
GH11I095876 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.3 -37.4 -37446 2.7 SRF JUND POLR2A FOS ATF2 CEP57 MTMR2 GC11M095879 RNA5SP345
GH11I095829 Enhancer 0.7 ENCODE dbSUPER 0.4 +8.7 8697 4.5 OSR2 JUND POLR2A ZNF629 CEBPG FOS SPI1 GC11M095816 CEP57 LOC101929295 MTMR2 RNA5SP345
GH11I095863 Enhancer 0.4 ENCODE dbSUPER 0.3 -23.8 -23820 1.7 CEP57 MTMR2 GC11M095879 RNA5SP345
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP345 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP345 Gene

Genomic Locations for RNA5SP345 Gene
chr11:95,840,017-95,840,124
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand
chr11:95,573,181-95,573,288
(GRCh37/hg19)

Genomic View for RNA5SP345 Gene

Genes around RNA5SP345 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP345 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP345 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNA5SP345 Gene

Proteins for RNA5SP345 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNA5SP345 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP345 Gene

Domains & Families for RNA5SP345 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP345 Gene

Function for RNA5SP345 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNA5SP345 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP345 Gene

Localization for RNA5SP345 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP345 Gene

Pathways & Interactions for RNA5SP345 Gene

SuperPathways for RNA5SP345 Gene

PathCards logo More details on SuperPathways for RNA5SP345
No Data Available

Interacting Proteins for RNA5SP345 Gene

Gene Ontology (GO) - Biological Process for RNA5SP345 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP345 Gene

Drugs & Compounds for RNA5SP345 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNA5SP345 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNA5SP345 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP345 Gene

No ASD Table

Relevant External Links for RNA5SP345 Gene

GeneLoc Exon Structure for
RNA5SP345
ECgene alternative splicing isoforms for
RNA5SP345

Expression for RNA5SP345 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP345 Gene

mRNA expression in normal human tissues for RNA5SP345 Gene
mRNA expression by GTEx for RNA5SP345 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP345 Gene:

RNA5SP345
genes like me logo Genes that share expression patterns with RNA5SP345: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP345 Gene

Orthologs for RNA5SP345 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP345 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 5S_rRNA 34
  • 100 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia 5S_rRNA 34
  • 67 (a)
 ManyToMany
mouse
(Mus musculus)
 Mammalia Gm23289 34
  • 62 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia 5S_rRNA 34
  • 60 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia 5S_rRNA 34
  • 53 (a)
 OneToMany
Species where no ortholog for RNA5SP345 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP345 Gene

ENSEMBL:
Gene Tree for RNA5SP345 (if available)
TreeFam:
Gene Tree for RNA5SP345 (if available)

Paralogs for RNA5SP345 Gene

No data available for Paralogs for RNA5SP345 Gene

Variants for RNA5SP345 Gene

Additional Variant Information for RNA5SP345 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP345

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP345 Gene

Disorders for RNA5SP345 Gene

No disorders were found for RNA5SP345 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP345 Gene

Publications for RNA5SP345 Gene

No publications were found for RNA5SP345 Gene.

Products for RNA5SP345 Gene

Sources for RNA5SP345 Gene

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