Aliases for RNA5SP325 Gene

Aliases for RNA5SP325 Gene

  • RNA, 5S Ribosomal Pseudogene 325 2 3 5
  • RNA, 5S Ribosomal 325 2 3
  • RNA5SP325 5
  • RN5S325 3

External Ids for RNA5SP325 Gene

Previous HGNC Symbols for RNA5SP325 Gene

  • RN5S325

Previous GeneCards Identifiers for RNA5SP325 Gene

  • GC10P108730

Summaries for RNA5SP325 Gene

GeneCards Summary for RNA5SP325 Gene

RNA5SP325 (RNA, 5S Ribosomal Pseudogene 325) is a Pseudogene.

Additional gene information for RNA5SP325 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP325 Gene

Genomics for RNA5SP325 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP325 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J106941 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -27.7 -27720 2.2 IKZF1 ZNF592 YY1 TAF9B RXRA ZNF316 NFE2 PRDM10 SMARCA4 EHMT2 piR-58297-057 RF00001-044 RNA5SP325 SORCS1
GH10J106974 Enhancer 0.5 Ensembl 0.7 +4.9 4880 1.4 NFIC CREB1 ATF2 ATF7 NFIB RF00001-044 RNA5SP325 HSALNG0080484 SORCS1
GH10J106973 Enhancer 0.5 Ensembl 0.7 +3.5 3480 1 CREB1 PKNOX1 CTBP1 ATF2 ATF7 RF00001-044 RNA5SP325 HSALNG0080484 SORCS1
GH10J106997 Enhancer 0.9 FANTOM5 Ensembl 0.3 +27.8 27779 4 NCOR1 IKZF1 TAL1 ZNF316 NFE2 PRDM10 ATF1 SMARCA4 SPI1 HDAC2 SORCS1 RF00001-044 RNA5SP325 HSALNG0080484
GH10J106931 Enhancer 1 FANTOM5 Ensembl 0.3 -39.2 -39220 3.6 BCLAF1 SP1 CEBPA YY1 ZNF592 FOXA2 RXRA IRF4 ZBTB33 EBF1 piR-58297-057 RF00001-044 RNA5SP325 SORCS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP325 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP325 Gene

Latest Assembly
chr10:106,970,021-106,970,150
(GRCh38/hg38)
Size:
130 bases
Orientation:
Plus strand

Previous Assembly
chr10:108,729,779-108,729,908
(GRCh37/hg19 by Entrez Gene)
Size:
130 bases
Orientation:
Plus strand

chr10:108,729,779-108,729,908
(GRCh37/hg19 by Ensembl)
Size:
130 bases
Orientation:
Plus strand

Genomic View for RNA5SP325 Gene

Genes around RNA5SP325 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP325 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP325 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP325 Gene

Proteins for RNA5SP325 Gene

Post-translational modifications for RNA5SP325 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP325 Gene

Domains & Families for RNA5SP325 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP325 Gene

Function for RNA5SP325 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP325 Gene

Localization for RNA5SP325 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP325 Gene

Pathways & Interactions for RNA5SP325 Gene

PathCards logo

SuperPathways for RNA5SP325 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP325 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP325 Gene

Drugs & Compounds for RNA5SP325 Gene

No Compound Related Data Available

Transcripts for RNA5SP325 Gene

mRNA/cDNA for RNA5SP325 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP325 Gene

No ASD Table

Relevant External Links for RNA5SP325 Gene

GeneLoc Exon Structure for
RNA5SP325

Expression for RNA5SP325 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP325 Gene

genes like me logo Genes that share expression patterns with RNA5SP325: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP325 Gene

Orthologs for RNA5SP325 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP325 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 30
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 5S_rRNA 30
  • 81 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia 5S_rRNA 30
  • 74 (a)
ManyToMany
Species where no ortholog for RNA5SP325 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP325 Gene

ENSEMBL:
Gene Tree for RNA5SP325 (if available)
TreeFam:
Gene Tree for RNA5SP325 (if available)
Alliance of Genome Resources:
Additional Orthologs for RNA5SP325

Paralogs for RNA5SP325 Gene

No data available for Paralogs for RNA5SP325 Gene

Variants for RNA5SP325 Gene

Additional Variant Information for RNA5SP325 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP325
Leiden Open Variation Database (LOVD)
RNA5SP325

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP325 Gene

Disorders for RNA5SP325 Gene

No disorders were found for RNA5SP325 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP325 Gene

Publications for RNA5SP325 Gene

No publications were found for RNA5SP325 Gene.

No data available for Mastermind for RNA5SP325 Gene

Products for RNA5SP325 Gene

Sources for RNA5SP325 Gene